Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00434
(832 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g10180.1 68416.m01219 kinesin motor protein-related similar t... 33 0.18
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 33 0.31
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 32 0.41
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ... 31 0.71
At3g28770.1 68416.m03591 expressed protein 30 2.2
At4g31820.1 68417.m04522 phototropic-responsive NPH3 family prot... 29 2.9
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 29 3.8
At1g23230.1 68414.m02906 expressed protein 29 3.8
At3g45530.1 68416.m04917 DC1 domain-containing protein contains ... 29 5.0
At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containi... 29 5.0
At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f... 28 6.6
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si... 28 8.7
At2g02720.1 68415.m00214 pectate lyase family protein similar to... 28 8.7
At1g51900.1 68414.m05850 hypothetical protein 28 8.7
>At3g10180.1 68416.m01219 kinesin motor protein-related similar to
centromere protein E GB:4502781 [Homo sapiens]
Length = 1348
Score = 33.5 bits (73), Expect = 0.18
Identities = 24/83 (28%), Positives = 37/83 (44%)
Frame = +2
Query: 203 RRH*EDPEVFIRRYREVYSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKL 382
++H ++ + S L H E EK+ + + KEK E TKL
Sbjct: 776 QKHETSLKMLSEHHESERSDLLSHIECLEKD-IGSLSSSSLAKEKENLRKDFEK-TKTKL 833
Query: 383 KHTETCEKNSLPTKDVIEQEKSA 451
K TE+ KNS+ K +E EK++
Sbjct: 834 KDTESKLKNSMQDKTKLEAEKAS 856
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 32.7 bits (71), Expect = 0.31
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +1
Query: 97 SPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL--KTSPLRRPRSLYSTVSRSLFEPAE 270
SP ++ R S++ P+ S +S R + ++ PL R RSLYS+VSRS
Sbjct: 193 SPDDSKSYRSRSRSRGPSCSYSSKSRSVSPARSISPRSRPLSRSRSLYSSVSRSQSRSKS 252
Query: 271 AHRDSGEEPAS 303
R P S
Sbjct: 253 RSRSRSNSPVS 263
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 32.3 bits (70), Expect = 0.41
Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 4/127 (3%)
Frame = +1
Query: 4 LSARIFYPLPHQKYIDSEWPAP*VTLPP*KT----SPRSPQT*RVSSKASTPAVSVTSTP 171
++ R+ P P + + S PA + PP + SP ++ +P+ S S P
Sbjct: 456 VAQRLPSPPPRRAGLPSPPPAQRLPSPPPRRAGLPSPMRIGGSHAANHLESPSPSSLSPP 515
Query: 172 MKRLCFRLLKTSPLRRPRSLYSTVSRSLFEPAEAHRDSGEEPASGQRRYRSGEGKEQIPE 351
++ ++L + P+RR RSL R H G G GK
Sbjct: 516 GRK---KVLPSPPVRRRRSLTPDEERVSLSQGGRHTSPSHIKQDGSMSPVRGRGKSSPSS 572
Query: 352 RHRELRS 372
RH++ RS
Sbjct: 573 RHQKARS 579
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
SP|Q07283 Trichohyalin {Homo sapiens}
Length = 1400
Score = 31.5 bits (68), Expect = 0.71
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +2
Query: 245 REVYSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFD-PTKLKHTETCEKNSLPT 421
+E Q+K + +E+N K+ +E + + K +E + +LK T E+N
Sbjct: 772 QEEKERQIKERQEREENERRAKEVLEQAENERKLKEALEQKENERRLKETREKEENKKKL 831
Query: 422 KDVIEQEKSAXXXXXXXXXANVSR 493
++ IE E+ A + R
Sbjct: 832 REAIELEEKEKRLIEAFERAEIER 855
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +2
Query: 233 IRRYREVYSSQLKHTETQEKNPLPD-KDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKN 409
+R E K +E EK + KDA E + NK L+ EN D K + E +++
Sbjct: 768 VRNKEENVQGNKKESEKVEKGEKKESKDAKSVETKDNKKLSSTENRDEAKERSGEDNKED 827
Query: 410 SLPTKD 427
+KD
Sbjct: 828 KEESKD 833
>At4g31820.1 68417.m04522 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 571
Score = 29.5 bits (63), Expect = 2.9
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Frame = +1
Query: 121 RVSSKASTPAVSVTSTPMKRLCFRLLKTSPLRRPRSLYSTVSRSLFEPAE-AHRDSGEEP 297
+++++AST A P+ R+ ++L LR S ++V+ S P E + GEE
Sbjct: 438 KLTNEASTHAAQNERLPL-RVVVQVLYFEQLRANHSPVASVAASSHSPVEKTEENKGEEA 496
Query: 298 AS---------GQRRYRSGEGKEQIPERHREL 366
G + RSG G + +P R R +
Sbjct: 497 TKKVELSKKSRGSKSTRSGGGAQLMPSRSRRI 528
>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam
domain PF04931: DNA polymerase V
Length = 1306
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 275 TETQEKNPLPDKDAIEAEKEKNKFLNGIENFD 370
TE E + LPD ++ +K K + +N + N+D
Sbjct: 12 TELVENDNLPDSSIVKKKKSKTEKMNTVANYD 43
>At1g23230.1 68414.m02906 expressed protein
Length = 1615
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 425 PLWGASSSRTFPCASA*WDRSSRC-RSGICSFPSP 324
PL+G + + P S W+R+ RC R I + PSP
Sbjct: 393 PLYGEDLAMSIPKGSLDWERAVRCIRHAIRTTPSP 427
>At3g45530.1 68416.m04917 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 692
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -2
Query: 471 CYKVVVQADFSCSMT--SFVGSEFFSHVSVCFSLVGSKFSMPF 349
C++ ++ DF C F F+S V F L+ S +MPF
Sbjct: 438 CFESIIDDDFLCRACYQMFCEGFFYSSKGVNFDLICSSITMPF 480
>At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containing
protein contains Pfam profile PF01388: ARID/BRIGHT DNA
binding domain
Length = 786
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +3
Query: 66 SVSDTPSLKDLPKVATDLKSQLEGF---NTSCLRDVDTNEKIVLPSAEDVATEKTQKS 230
S+ + + DLPK+ + SQ E + S +DT E ++ P+AED E S
Sbjct: 78 SLEEVTNADDLPKIDDEKNSQFETSPHPSPSPSVALDTEEGLINPTAEDTVEENIVSS 135
>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
family protein / UPP synthetase family protein contains
putative undecaprenyl diphosphate synthase domain
[PF01255]; similar to S. cerevisiae dehydrodolichyl
diphosphate synthetase (DEDOL-PP
synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
Length = 271
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 218 LLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLG 99
++ G+ +KHNL IG+D AG + + LQ C ++G
Sbjct: 41 IMDGNRRFAKKHNL-IGLDAGHRAGFISVKYILQYCKEIG 79
>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
similar to sucrose-phosphate synthase isoform 1, Citrus
unshiu, PIR:S72648
Length = 894
Score = 27.9 bits (59), Expect = 8.7
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +3
Query: 66 SVSDTPS--LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEK 218
S SD+PS L+D+ ++ +LK L+G + VDTN AED A E+
Sbjct: 532 SDSDSPSDSLRDINDISLNLKLSLDGEKSGSNNGVDTN-----LDAEDRAAER 579
>At2g02720.1 68415.m00214 pectate lyase family protein similar to
pectate lyase P59 SP:P15722 from [Lycopersicon
esculentum]
Length = 455
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/58 (27%), Positives = 23/58 (39%)
Frame = +2
Query: 269 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNSLPTKDVIEQE 442
K +E P P+ + + EK+ FLNG K KN +P K I +
Sbjct: 375 KQVTKREYTPYPEWKSWNWQSEKDYFLNGAYFVQSGKANAWSATPKNPIPRKFAIRPQ 432
>At1g51900.1 68414.m05850 hypothetical protein
Length = 774
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 218 DPEVFIRRYREVYSSQLKHTETQEKNPLPDKDAIEAEK 331
DP+++IR Y E + K + T + + + D+IE K
Sbjct: 362 DPDIYIRSYEESPNEVYKFSLTDLEEEIMENDSIEGVK 399
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,044,207
Number of Sequences: 28952
Number of extensions: 365350
Number of successful extensions: 1180
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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