Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00433X
         (469 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch...    28   0.62 
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc...    28   0.82 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   1.9  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    26   2.5  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   2.5  
SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch...    26   3.3  
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    25   5.8  
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    25   7.6  

>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 160

 Score = 28.3 bits (60), Expect = 0.62
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 334 RRTHVSPAAAHAGAHQPLKPVTTHPVAAVTS 426
           RR    PA AH  + +  +PVT HPVA  T+
Sbjct: 129 RRQPAPPATAHFVSTENNEPVTLHPVAYDTT 159


>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 27.9 bits (59), Expect = 0.82
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 334 RRTHVSPAAAHAGAHQPLKPVTTHPVAAVTS 426
           RR    PA AH  + +  +PVT HPVA  T+
Sbjct: 129 RRQPAPPAKAHFVSTENNEPVTLHPVAYDTT 159


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +1

Query: 328  APRRTHVSPAAAHAGAHQPLKPVTTHPVAAVTSGAPA 438
            AP  T     ++ A    P  P   HP AA  S APA
Sbjct: 1514 APSSTLPPSQSSFAHVPSPAPPAPQHPSAAALSSAPA 1550


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 337 RTHVSPAAAHAGAHQPLKPVTTHPVAAVTSGAPAPSRP 450
           R H SP   +  +       +T P +A T+G+PA S P
Sbjct: 291 RKHPSPYKPYLNSSHDTLGSSTRPSSADTAGSPATSPP 328


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 334 RRTHVSPAAAHAGAHQPLKPVT-THPVAAVTSGAPAPSRPIL 456
           ++T  SP+ +HA    PL P + TH    +    P P RP L
Sbjct: 65  KQTTSSPSFSHAAPLHPLSPPSFTHSQPQI-QAQPVPRRPSL 105


>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 33  SAVNPHEFGTVTKNAVVEI 89
           S+ NPH F +VTK  VV I
Sbjct: 216 SSANPHHFLSVTKQGVVAI 234


>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 340 THVSPAAAHAGAHQPLKPVTTHPVAAVTSGAPA 438
           T ++PA A A A          P AA T  APA
Sbjct: 149 TGITPAVAAAAATPAAAATPATPAAAATPAAPA 181


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 52  SSERSQKTPSSRSEVEINEELQRGSGDDEGTGRRRP 159
           +++R ++ PSS  +V  +   +RGS D   +G   P
Sbjct: 112 AAKRPRRQPSSFLDVHASNTRKRGSPDTPDSGHSTP 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,423,191
Number of Sequences: 5004
Number of extensions: 19896
Number of successful extensions: 67
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)