Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00433X
         (469 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57)               29   2.5  
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)                   28   4.4  
SB_43334| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0)               27   5.9  
SB_11570| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  

>SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57)
          Length = 1121

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = +1

Query: 349 SPAAAHAGAHQP--LKPVTTHPVAAVTSGAPAPSRP 450
           SPAAA + +  P  L+P    P  A   G P P RP
Sbjct: 816 SPAAAGSSSITPSNLRPTNPTPAHATDGGTPTPLRP 851


>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
          Length = 638

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +1

Query: 46  RTSSERSQKTPSSRSEVEINEELQRGSGDDEGTGRR 153
           R  S  S+  PSS S    N  L+RG   D G  RR
Sbjct: 347 RRESRNSESKPSSSSSKNRNTGLERGRVQDFGRDRR 382


>SB_43334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 494

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
 Frame = +1

Query: 319 YVEAPRRTHVSPAAAHAGAHQPLKPVTTH----PVAAVTSGAPAP 441
           Y   P  TH  P A H+G   P  P        PVA + SG   P
Sbjct: 294 YALHPAGTHYIPVALHSGIPMPQMPFPNFSSMLPVATMLSGGLGP 338


>SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0)
          Length = 1066

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +1

Query: 313 NAYVEAPRRTHVSPAAAHAGAHQPLKPVTTHPVAAVTSGAPAPSRP 450
           N    AP  T ++P  A     +PL P    P +  T  APAP  P
Sbjct: 765 NEIEHAPPTTVINPPQAKPAEPEPLAP---RPSSPQTQPAPAPPEP 807


>SB_11570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 457

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +1

Query: 313 NAYVEAPRRTHVSPAAAHAGAHQPLKPVTTHPVAAVTSGAPAPS 444
           +A +E  + +  S + +HAGA Q + P+ T    A+ SG  AP+
Sbjct: 27  SAQIEELQMSLPSASPSHAGAQQRVAPLLT--TQAIVSGPAAPA 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,668,850
Number of Sequences: 59808
Number of extensions: 179454
Number of successful extensions: 649
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)