Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00433X
         (469 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-3|CAM36344.1|  204|Caenorhabditis elegans Hypothetical ...    30   0.72 
Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical pr...    29   1.3  
Z83107-6|CAD92391.1|  877|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z83107-5|CAD92390.1|  764|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z83107-4|CAB05498.1|  878|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AL110487-6|CAB54433.2|  472|Caenorhabditis elegans Hypothetical ...    29   2.2  
AF039047-11|AAB94230.1|  354|Caenorhabditis elegans Prion-like-(...    29   2.2  
AF077529-4|AAC26255.2|  783|Caenorhabditis elegans Hypothetical ...    28   2.9  
U97012-3|AAK39144.2|  588|Caenorhabditis elegans Groundhog (hedg...    28   3.8  
Z81576-3|CAB04641.1|  534|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    27   5.1  
Z93387-4|CAI91177.1|  333|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z93387-3|CAB07652.1|  352|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z68301-5|CAA92620.1|  301|Caenorhabditis elegans Hypothetical pr...    27   6.7  
V00148-1|CAA23464.1|  301|Caenorhabditis elegans protein ( Caeno...    27   6.7  
J01048-1|AAA27990.1|  301|Caenorhabditis elegans protein ( C.ele...    27   6.7  
AY347575-1|AAP97869.1|  301|Caenorhabditis elegans COLlagen stru...    27   6.7  

>CU457741-3|CAM36344.1|  204|Caenorhabditis elegans Hypothetical
           protein C42C1.3 protein.
          Length = 204

 Score = 30.3 bits (65), Expect = 0.72
 Identities = 11/33 (33%), Positives = 24/33 (72%)
 Frame = +3

Query: 27  RISAVNPHEFGTVTKNAVVEIRSRNQRRTSARK 125
           ++S + PH+  +V KNA+  ++S+ +++TS +K
Sbjct: 156 KLSKIAPHQHSSVVKNAI--MKSKREKKTSCKK 186


>Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical
           protein DY3.5 protein.
          Length = 796

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 379 QPLKPVTTHPVAAVTSGAPAPSRP 450
           +P++PV    VA VT G P P+RP
Sbjct: 603 RPVQPVPPMSVATVTRGPPPPTRP 626


>Z83107-6|CAD92391.1|  877|Caenorhabditis elegans Hypothetical
           protein F32A7.5c protein.
          Length = 877

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 382 PLKPVTTHPVAAVTSGAPAPSRP 450
           P KP    P +A TS APAP  P
Sbjct: 356 PSKPAPAAPASAATSPAPAPEAP 378


>Z83107-5|CAD92390.1|  764|Caenorhabditis elegans Hypothetical
           protein F32A7.5b protein.
          Length = 764

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 382 PLKPVTTHPVAAVTSGAPAPSRP 450
           P KP    P +A TS APAP  P
Sbjct: 356 PSKPAPAAPASAATSPAPAPEAP 378


>Z83107-4|CAB05498.1|  878|Caenorhabditis elegans Hypothetical
           protein F32A7.5a protein.
          Length = 878

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 382 PLKPVTTHPVAAVTSGAPAPSRP 450
           P KP    P +A TS APAP  P
Sbjct: 356 PSKPAPAAPASAATSPAPAPEAP 378


>AL110487-6|CAB54433.2|  472|Caenorhabditis elegans Hypothetical
           protein Y39E4B.7 protein.
          Length = 472

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
 Frame = +1

Query: 322 VEAPRRTHVS-PAAAHAGAHQPLKPVTTHPVAAVTSGAPAPSR 447
           V+ P  TH S   A     H P  PVTT       SG   PSR
Sbjct: 405 VDTPSATHQSYEEALEEALHGPASPVTTEDSINSKSGRRTPSR 447


>AF039047-11|AAB94230.1|  354|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 51
           protein.
          Length = 354

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 313 NAYVEAPRRTH-VSPAAAHAGAHQPLKPVTTHPVAAVTS 426
           NA   APR+ H V P+A       P +PV   PV A+++
Sbjct: 58  NAPPPAPRQQHHVPPSAVRPNPMPPQRPVAQQPVRALSA 96


>AF077529-4|AAC26255.2|  783|Caenorhabditis elegans Hypothetical
           protein C09E8.1a protein.
          Length = 783

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 43  IRTSSERSQKTPSSRSEVEINE-ELQRGSGDDEG 141
           IR  S    +  ++R   E++E EL RG+GDD G
Sbjct: 734 IRAHSVEHNRPSNTREASEVDEAELPRGAGDDNG 767


>U97012-3|AAK39144.2|  588|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 9 protein.
          Length = 588

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +3

Query: 36  AVNPHEFGTVTKNAVVEIRSRNQRRTSARKWGR*GNRKATAR 161
           A NP++    T+N V   RSRN   T+ RK GR G +  +++
Sbjct: 244 AENPYQ----TRNGVNNYRSRNSYGTNNRKHGRNGKKGKSSK 281


>Z81576-3|CAB04641.1|  534|Caenorhabditis elegans Hypothetical
           protein R10E8.4 protein.
          Length = 534

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 127 HFLAEVLR*FLLLISTTAFFVTVPNSCGFTALIL 26
           H + E+LR   +L+    F +TVP+  G  A IL
Sbjct: 117 HHITEILRKREILLKVNEFVLTVPSKNGHVASIL 150


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical protein
            ZK945.9 protein.
          Length = 3178

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 324  GGSSANSRVTRSGTRGRAPTSQAGDDASGCRGDKRRAGALQA 449
            GGS++ S    +G+ G +  S +G D SG        GA  A
Sbjct: 1204 GGSTSGSGSDSNGSSGVSTKSSSGSDTSGSSDSSGANGAFSA 1245


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
            protein ZK945.9 protein.
          Length = 3178

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 324  GGSSANSRVTRSGTRGRAPTSQAGDDASGCRGDKRRAGALQA 449
            GGS++ S    +G+ G +  S +G D SG        GA  A
Sbjct: 1204 GGSTSGSGSDSNGSSGVSTKSSSGSDTSGSSDSSGANGAFSA 1245


>Z93387-4|CAI91177.1|  333|Caenorhabditis elegans Hypothetical
           protein T02E9.2b protein.
          Length = 333

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = +1

Query: 328 APRRTHVSPAAAHAGAHQPLKPVTTHPVAAVTSGAPAPS 444
           AP    V+PA   AG +    P     VA     AP PS
Sbjct: 122 APGPAEVAPAQVQAGGNYQDAPAQVAEVATAQESAPPPS 160


>Z93387-3|CAB07652.1|  352|Caenorhabditis elegans Hypothetical
           protein T02E9.2a protein.
          Length = 352

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = +1

Query: 328 APRRTHVSPAAAHAGAHQPLKPVTTHPVAAVTSGAPAPS 444
           AP    V+PA   AG +    P     VA     AP PS
Sbjct: 122 APGPAEVAPAQVQAGGNYQDAPAQVAEVATAQESAPPPS 160


>Z68301-5|CAA92620.1|  301|Caenorhabditis elegans Hypothetical
           protein W01B6.7 protein.
          Length = 301

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +1

Query: 349 SPAAAHAGAHQPLKPVTTHPVAAVTSGAPAPSRP 450
           +P     GA  P +PVT  P      G P P+ P
Sbjct: 127 APGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGP 160


>V00148-1|CAA23464.1|  301|Caenorhabditis elegans protein (
           Caenorhabditis elegansgene Col-2 coding for a collagen.
           ).
          Length = 301

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +1

Query: 349 SPAAAHAGAHQPLKPVTTHPVAAVTSGAPAPSRP 450
           +P     GA  P +PVT  P      G P P+ P
Sbjct: 127 APGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGP 160


>J01048-1|AAA27990.1|  301|Caenorhabditis elegans protein (
           C.elegans (nematode)collagen 2 (col-2) gene, complete
           cds. ).
          Length = 301

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +1

Query: 349 SPAAAHAGAHQPLKPVTTHPVAAVTSGAPAPSRP 450
           +P     GA  P +PVT  P      G P P+ P
Sbjct: 127 APGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGP 160


>AY347575-1|AAP97869.1|  301|Caenorhabditis elegans COLlagen
           structural gene, probabledorsal and ventral cuticle
           component, from embryo to adult,but maximal in dauer
           (28.0 kD) (col-2) protein.
          Length = 301

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +1

Query: 349 SPAAAHAGAHQPLKPVTTHPVAAVTSGAPAPSRP 450
           +P     GA  P +PVT  P      G P P+ P
Sbjct: 127 APGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGP 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,254,721
Number of Sequences: 27780
Number of extensions: 125450
Number of successful extensions: 562
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)