Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00432
(547 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0) 127 5e-30
SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23) 31 0.81
SB_1163| Best HMM Match : DMA (HMM E-Value=1.4e-11) 30 1.1
SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6) 29 1.9
SB_55854| Best HMM Match : NinE (HMM E-Value=2.1) 29 1.9
SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71) 29 3.3
SB_8760| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0) 29 3.3
SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07) 28 4.3
SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08) 28 4.3
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_10986| Best HMM Match : WD40 (HMM E-Value=0.026) 28 5.7
SB_7512| Best HMM Match : F5_F8_type_C (HMM E-Value=4.5e-30) 28 5.7
SB_46448| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
Length = 768
Score = 127 bits (307), Expect = 5e-30
Identities = 56/75 (74%), Positives = 65/75 (86%)
Frame = +2
Query: 29 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 208
MTN+KGYRRGTR +F+++FR G LSTY+K YKVGDIVD++ NGAVQKGMPHKVYHGK
Sbjct: 423 MTNTKGYRRGTRYMFSKKFRHRGVEHLSTYLKCYKVGDIVDVKANGAVQKGMPHKVYHGK 482
Query: 209 TGRVYNVTAHALGVI 253
TGRVYNVT ALGV+
Sbjct: 483 TGRVYNVTKRALGVV 497
>SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)
Length = 565
Score = 30.7 bits (66), Expect = 0.81
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 340 FLKRVKENERLLKEAKAAGKTVNLKRQPA-PPKAAHIVSGTEKPVLLAPIP 489
F+KR + +R L+E A +NL ++PA P K + EKPV P P
Sbjct: 272 FVKRTQRRQRELEEVADA---INLAKRPAQPEKPLKFLVKVEKPVPRPPTP 319
>SB_1163| Best HMM Match : DMA (HMM E-Value=1.4e-11)
Length = 403
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +1
Query: 226 RDCSCSRCDCNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERL 372
RDC+CS+C R R+ R+ I + K ++ R+ + +R EN RL
Sbjct: 44 RDCTCSKCQLITE-RQRVTAARVAILRQQRKSAELREKY-QREMENVRL 90
>SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6)
Length = 305
Score = 29.5 bits (63), Expect = 1.9
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 403 VNLKRQPAPPKAAHIVSGTEKPVLLAPIPYE 495
VN + PP A + ++ ++PVL P+P++
Sbjct: 130 VNKSKAETPPPAYYTITSNQEPVLNMPVPWQ 160
>SB_55854| Best HMM Match : NinE (HMM E-Value=2.1)
Length = 271
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +1
Query: 286 KRINIRVEH-VKHSKCRQDFLKRVKENERLLKEAKAAGKT 402
+RI ++H ++ K +QDF+ +KE RL +E+++ T
Sbjct: 39 ERIQSCIDHKLEERKIKQDFVTLIKERNRLGRESRSGAST 78
>SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 43 GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 165
G+ H G+ R+ TWNYS + + S +W + R +
Sbjct: 129 GMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 169
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +1
Query: 43 GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 165
G+ + G++R+ TWNYS + + S +W + R +
Sbjct: 87 GMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 127
>SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 43 GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 165
G+ H G+ R+ TWNYS + + S +W + R +
Sbjct: 129 GMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 169
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +1
Query: 43 GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 165
G+ + G++R+ TWNYS + + S +W + R +
Sbjct: 87 GMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 127
>SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71)
Length = 1139
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 166 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCNK 261
C+S + D+S VQ+DCS R DC++
Sbjct: 736 CNSSDIGSTPTILSDKSPVQQDCSSIRRDCSR 767
>SB_8760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 874
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +1
Query: 13 NTRLEDDELQGLPPRHQGLVRSQVPHTWNYSALHVHESV--QSWRHC 147
NTR E+ EL L PR QGL + W L +H + S R+C
Sbjct: 472 NTRGEERELCLLLPRRQGLQQIPTLELWEKRNLKIHRNSLRSSARNC 518
>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1706
Score = 28.7 bits (61), Expect = 3.3
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +2
Query: 158 GNGAVQKGMPHKVYHG-KTGRVYNVTAHALGVIATSVFAEGLYRSASISVLSMSSTPSAD 334
G + G PH H G +N T+ A G IAT++ + + S +V+ S P A+
Sbjct: 823 GTFHLDSGNPHGCQHCFGYGHAHNCTS-ASGFIATNITSNFITGSDGWTVVDYSGIPVAN 881
Query: 335 KTSL 346
TSL
Sbjct: 882 VTSL 885
>SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
Length = 1458
Score = 28.3 bits (60), Expect = 4.3
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +1
Query: 286 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 465
K I + EH + S C Q F + N + ++ + GKT + + K HI+S +EK
Sbjct: 413 KNIELLTEHWECSGCEQRFNRHDNYNRHVTEKRCSGGKTQLICK---GEKFKHIMSSSEK 469
>SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)
Length = 654
Score = 28.3 bits (60), Expect = 4.3
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = -2
Query: 390 SLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDAL--RYNPSANTLVAITPRA*AVTLYT 217
S+ F + I D+LK L + + TD++ + +YN + +TL+ + T+
Sbjct: 227 SVSFRKIKSINIDTLKNDLRSSELHHSPKTDLNGIVKKYNQTLSTLLDSHAQVKIKTITN 286
Query: 216 RPVFPWY 196
RP PW+
Sbjct: 287 RPRLPWF 293
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/71 (21%), Positives = 35/71 (49%)
Frame = +1
Query: 286 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 465
+++ + K R + ++ + +RLL+++++ K L++ P P A + + E
Sbjct: 1536 RKLTVEQREPYRLKARDNRVRLKDQEKRLLRQSESEKKHAALEQPPTP--APQVETQPET 1593
Query: 466 PVLLAPIPYEF 498
P+ A P+ F
Sbjct: 1594 PIHQAASPFVF 1604
>SB_10986| Best HMM Match : WD40 (HMM E-Value=0.026)
Length = 528
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +1
Query: 202 WKDRSRVQRDCSCSRCDCNKRVRG--RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLL 375
WK++ ++ + C K + + +P + + ++ ++ SKC Q+ L KEN RL+
Sbjct: 342 WKEQYIIRANWFSGHCHVQKLHQNEHKTLPHQ-SAKITCLRISKCSQNLLASAKENSRLV 400
>SB_7512| Best HMM Match : F5_F8_type_C (HMM E-Value=4.5e-30)
Length = 147
Score = 27.9 bits (59), Expect = 5.7
Identities = 21/73 (28%), Positives = 32/73 (43%)
Frame = +2
Query: 62 RDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHA 241
R + + T G + +M YK+G D+ ++G KV+ G T R Y V
Sbjct: 58 RVITVTKVATQGNRNFAEWMTSYKIGYSSDLSIWKVYREGGQEKVFPGNTDR-YTV---V 113
Query: 242 LGVIATSVFAEGL 280
GV+A V G+
Sbjct: 114 YGVLAQPVVTRGI 126
>SB_46448| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 395
Score = 27.5 bits (58), Expect = 7.6
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 6/106 (5%)
Frame = +1
Query: 4 KLCNTRLEDDELQGLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRH-CRHQRQW----C 168
++ + +D+ +GL H L Q H W +A V Q + Q+ + C
Sbjct: 265 RIIQVQTKDNIPEGLTWSHGMLPEEQKTHMWTTTARSVTTKTQDGKQDTTEQKSYKDSCC 324
Query: 169 SSKGYATQSIPWKDRSRVQRDCSCSRCDCNKRVRGR-IIPKRINIR 303
+ K + TQS P + + SR N V G+ +IP++ ++
Sbjct: 325 NPKAFLTQSPPMTEEEWLPFAKYLSRTRIN--VNGKHLIPRKCFVK 368
>SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 308 SMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLP 442
++S+ PS KT+ ++R RKP +PAR ST ++ P
Sbjct: 633 TLSAPPSRPKTAPTSAQRTPEPIRKPLVPARMSTDSTDAFKIQAP 677
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,235,863
Number of Sequences: 59808
Number of extensions: 369935
Number of successful extensions: 1184
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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