Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00432
(547 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Simi... 107 4e-24
At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Simi... 107 4e-24
At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60... 106 1e-23
At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) simi... 106 1e-23
At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138... 34 0.071
At4g21550.1 68417.m03113 transcriptional factor B3 family protei... 29 1.5
At4g24350.1 68417.m03494 phosphorylase family protein contains P... 29 2.0
At5g05900.1 68418.m00651 UDP-glucoronosyl/UDP-glucosyl transfera... 28 3.5
At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase fa... 28 3.5
At2g13150.1 68415.m01450 expressed protein contains a bZIP trans... 28 3.5
At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative... 28 3.5
At5g41220.1 68418.m05009 glutathione S-transferase, putative sim... 27 6.2
At5g10910.1 68418.m01266 mraW methylase family protein contains ... 27 6.2
At4g31490.1 68417.m04473 coatomer beta subunit, putative / beta-... 27 6.2
At3g45880.1 68416.m04965 hypothetical protein 27 6.2
At1g04680.1 68414.m00465 pectate lyase family protein similar to... 27 6.2
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim... 27 8.2
>At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Similar
to ribosomal protein L21 (gb|L38826). ESTs
gb|AA395597,gb|ATTS5197 come from this gene
Length = 164
Score = 107 bits (258), Expect = 4e-24
Identities = 52/111 (46%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Frame = +2
Query: 29 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 208
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 209 TGRVYNVTAHALGVIATSVFAEGLYRS-ASISVLSMSSTPSADKTSLRESK 358
TGR++NVT A+GV + R + V + + A++ LR+ K
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKK 111
Score = 79.8 bits (188), Expect = 1e-15
Identities = 38/84 (45%), Positives = 55/84 (65%)
Frame = +1
Query: 250 DCNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAP 429
+ NK++ RII KRI++RVEHV+ S+C ++F R K+N+ L AKA G+T++ KRQP
Sbjct: 75 EVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKG 134
Query: 430 PKAAHIVSGTEKPVLLAPIPYEFV 501
PK +V G + PIPY+ V
Sbjct: 135 PKPGFMVEGMTLET-VTPIPYDVV 157
>At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Similar
to L21 family of ribosomal protein; amino acid sequence
is identical to F21M12.8
Length = 164
Score = 107 bits (258), Expect = 4e-24
Identities = 52/111 (46%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Frame = +2
Query: 29 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 208
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 209 TGRVYNVTAHALGVIATSVFAEGLYRS-ASISVLSMSSTPSADKTSLRESK 358
TGR++NVT A+GV + R + V + + A++ LR+ K
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKK 111
Score = 79.8 bits (188), Expect = 1e-15
Identities = 38/84 (45%), Positives = 55/84 (65%)
Frame = +1
Query: 250 DCNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAP 429
+ NK++ RII KRI++RVEHV+ S+C ++F R K+N+ L AKA G+T++ KRQP
Sbjct: 75 EVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKG 134
Query: 430 PKAAHIVSGTEKPVLLAPIPYEFV 501
PK +V G + PIPY+ V
Sbjct: 135 PKPGFMVEGMTLET-VTPIPYDVV 157
>At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60S
ribosomal protein L21 GI:3885884 from [Oryza sativa]
Length = 164
Score = 106 bits (254), Expect = 1e-23
Identities = 51/111 (45%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Frame = +2
Query: 29 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 208
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 209 TGRVYNVTAHALGVIATSVFAEGLYRS-ASISVLSMSSTPSADKTSLRESK 358
TGR++NVT A+GV + R + V + + A++ LR+ +
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQ 111
Score = 80.6 bits (190), Expect = 6e-16
Identities = 38/84 (45%), Positives = 56/84 (66%)
Frame = +1
Query: 250 DCNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAP 429
+ NK++ RII KRI++RVEHV+ S+C ++F R K+N+ L +AKA G+T++ KRQP
Sbjct: 75 EVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKG 134
Query: 430 PKAAHIVSGTEKPVLLAPIPYEFV 501
PK +V G + PIPY+ V
Sbjct: 135 PKPGFMVEGMTLET-VTPIPYDVV 157
>At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) similar
to 60S ribosomal protein L21 GB:Q43291 GI:2851508 from
[Arabidopsis thaliana]
Length = 164
Score = 106 bits (254), Expect = 1e-23
Identities = 51/111 (45%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Frame = +2
Query: 29 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 208
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 209 TGRVYNVTAHALGVIATSVFAEGLYRS-ASISVLSMSSTPSADKTSLRESK 358
TGR++NVT A+GV + R + V + + A++ LR+ +
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQ 111
Score = 80.6 bits (190), Expect = 6e-16
Identities = 38/84 (45%), Positives = 56/84 (66%)
Frame = +1
Query: 250 DCNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAP 429
+ NK++ RII KRI++RVEHV+ S+C ++F R K+N+ L +AKA G+T++ KRQP
Sbjct: 75 EVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKG 134
Query: 430 PKAAHIVSGTEKPVLLAPIPYEFV 501
PK +V G + PIPY+ V
Sbjct: 135 PKPGFMVEGMTLET-VTPIPYDVV 157
>At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown;
Length = 672
Score = 33.9 bits (74), Expect = 0.071
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = +2
Query: 179 GMPHKVYHGKTGRVYNVTAHALGVIATSVFAEGLYRSASISVLSMSSTPSADKTSLRESK 358
G P K Y+G GR+ AHAL + + L+R L+ P AD+ S + S
Sbjct: 182 GKPKKTYNGTYGRLLAYAAHALAEGQNKLEPKELWREPKDQALAWK--PCADQRSWKPSD 239
Query: 359 RMRGY 373
GY
Sbjct: 240 GKNGY 244
>At4g21550.1 68417.m03113 transcriptional factor B3 family protein
low similarity to SP|Q01593 Abscisic acid-insensitive
protein 3 {Arabidopsis thaliana}, SP|P37398 Viviparous
protein homolog {Oryza sativa}; contains Pfam profile
PF02362: B3 DNA binding domain
Length = 721
Score = 29.5 bits (63), Expect = 1.5
Identities = 21/70 (30%), Positives = 37/70 (52%)
Frame = +1
Query: 226 RDCSCSRCDCNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTV 405
R CSC+ CD NKR R ++ +R ++E K R+ L+++ + L ++A +
Sbjct: 585 RCCSCAVCDTNKRRRRSLLLRREKKQME--KEDNARK-LLEQLNSDNGL---HQSANNSE 638
Query: 406 NLKRQPAPPK 435
N +R +P K
Sbjct: 639 NHERHASPLK 648
>At4g24350.1 68417.m03494 phosphorylase family protein contains Pfam
PF01048: Phosphorylase family
Length = 336
Score = 29.1 bits (62), Expect = 2.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 154 DVYNVSNFVHFHVRGERNSSM 92
DV+NV VHF + G N+SM
Sbjct: 114 DVFNVKGIVHFGIAGNMNNSM 134
>At5g05900.1 68418.m00651 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 450
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -1
Query: 193 FVWHTLLNCTIASDVYNVSNFVHFHVRGERN 101
FVW LLN SDV+ V +H R ERN
Sbjct: 369 FVWDQLLNARFVSDVWMVG--LHLEGRIERN 397
>At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase family
protein belongs to Pfam:PF03372:
Endonuclease/Exonuclease/phosphatase family; contains 3
WD-40 repeats (PF00400);similar to Type II
inositol-1,4,5-trisphosphate 5-phosphatase EC 3.1.3.56
(5PTASE) (INPP5B) (SP:P32019) [Homo sapiens]
Length = 1305
Score = 28.3 bits (60), Expect = 3.5
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +1
Query: 289 RINIRVEHVKHSKCRQDFLKRVKENERL 372
+ ++++EHV S RQ+F + +K NE++
Sbjct: 920 KFHVKIEHVDRSVRRQEFGRIIKTNEKV 947
>At2g13150.1 68415.m01450 expressed protein contains a bZIP
transcription factor basic domain signature (PDOC00036)
Length = 262
Score = 28.3 bits (60), Expect = 3.5
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +2
Query: 308 SMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLPTSSVELRNPS 472
S +STPS ++ + S P L PS+ R + +PL P++SVE R+ S
Sbjct: 4 SDNSTPSRPRSITQPSLAFSSL---PPLSPSPSSSRRNSIPLMNPSASVESRDSS 55
>At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative /
adrenodoxin reductase, putative strong similarity to
Ferredoxin--NADP reductase, chloroplast precursor (EC
1.18.1.2) (FNR) from {Pisum sativum} SP|P10933,
{Mesembryanthemum crystallinum} SP|P41343, {Spinacia
oleracea} SP|P00455, [Capsicum annuum] GI:6899972
Length = 369
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 128 YKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIATS 262
Y+ G V + +G + G PHKV R+Y++ + ALG + S
Sbjct: 125 YREGQSVGVIADGIDKNGKPHKV------RLYSIASSALGDLGNS 163
>At5g41220.1 68418.m05009 glutathione S-transferase, putative
similar to emb|CAA10662
Length = 590
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 88 HTWNYSALHVHESVQSWRHCRHQRQWCS 171
+T NY + E +WR RH ++WCS
Sbjct: 370 YTNNYKSNFTLE--HAWRELRHSKKWCS 395
>At5g10910.1 68418.m01266 mraW methylase family protein contains
Pfam profile PF01795: MraW methylase family
Length = 434
Score = 27.5 bits (58), Expect = 6.2
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Frame = +1
Query: 232 CSCSRCDCNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNL 411
CS N +V R+ + IN+ ++ S+ ++ ++ K + + E A VN
Sbjct: 13 CSSILSSNNNKVLSRLPRRSINVIAGNLNSSETKKKEKEKRKRRKEIEVEKATAEAVVNK 72
Query: 412 -KRQPAPPKAAHIVSGTEKPVLLAPI 486
KR+ + + G E P P+
Sbjct: 73 EKRRTRSSRGYELADGDEVPSSHVPV 98
>At4g31490.1 68417.m04473 coatomer beta subunit, putative /
beta-coat protein, putative / beta-COP, putative similar
to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
from {Rattus norvegicus} SP|P23514, {Mus musculus}
SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 948
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 295 NIRVEHVKHSKCRQDFLKRVKENE-RLLKEAKAAGKTVN 408
N+ ++ + CRQ F+K + E + R ++E KA +T +
Sbjct: 628 NVEMKKIWLESCRQSFVKMISEKQLREMEELKAKTQTTH 666
>At3g45880.1 68416.m04965 hypothetical protein
Length = 431
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = -2
Query: 423 WLSLQVDGLAGSLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDALRYNPSANTL 259
W +Q D FLQ L SL VLS D ++D + ++ PSA L
Sbjct: 299 WYDMQFDIKYAYFNFLQSLLYKSSSLNPVLSWREDEDSESSDAEGSKFTPSATNL 353
>At1g04680.1 68414.m00465 pectate lyase family protein similar to
pectate lyase GP:14531296 from [Fragaria x ananassa]
Length = 431
Score = 27.5 bits (58), Expect = 6.2
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -1
Query: 205 SMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNS-SMCAEPASEQVPGAAAVTLGVRH 29
S +F W T+ +D +S F HV + NS S CA+ + V G+ A+T+ H
Sbjct: 216 SETHFGWRTM------ADGDAISIFGSSHVWIDHNSLSHCADGLVDAVMGSTAITISNNH 269
Query: 28 L 26
L
Sbjct: 270 L 270
>At5g41240.1 68418.m05011 glutathione S-transferase, putative
similar to glutathione S-transferase, GST 10b
GB:CAA10662 [Arabidopsis thaliana] 37349.
Length = 591
Score = 27.1 bits (57), Expect = 8.2
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +1
Query: 133 SWRHCRHQRQWCSS 174
+WR RH ++WCS+
Sbjct: 385 AWRELRHNKKWCST 398
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,663,013
Number of Sequences: 28952
Number of extensions: 241021
Number of successful extensions: 832
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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