Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00431
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    73   6e-14
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    29   0.77 
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    28   1.3  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    27   3.1  
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    27   4.1  
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    26   5.4  
SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr...    26   5.4  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    26   7.2  
SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual    26   7.2  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    26   7.2  
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p...    25   9.5  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   9.5  
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    25   9.5  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 72.5 bits (170), Expect = 6e-14
 Identities = 28/57 (49%), Positives = 40/57 (70%)
 Frame = +3

Query: 510 LWAHKSYKAKWPLRVILIIFNSLAFQDSALDWARDHRMHHKYSETDADPHNATRGFF 680
           LW+H++YKAK PL   L    + AF+ S   W+RDHR HH+Y++TD DP+N  +GF+
Sbjct: 112 LWSHRAYKAKKPLEYFLAAGGAAAFEGSIRWWSRDHRAHHRYTDTDKDPYNVKKGFW 168



 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 23/56 (41%), Positives = 33/56 (58%)
 Frame = +1

Query: 340 NYPKKLVWRNIILFTYLHIAALYGGYLFLFHAKWQTDLFAYILYVMSGLGITAGAH 507
           N+ + L W + +L   L + A+YG  +F    + +T +FA I Y  SGLGITAG H
Sbjct: 57  NWWRHLNWLHCMLIFGLPMIAIYG--VFTTPLQTKTLIFAIIYYAYSGLGITAGYH 110


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 387 PSYC--CVVWRLPFLISCEMANRPICLYIVCNVRTWHHSRCT*LWAHKSYKAK 539
           P +C  C+  + PFL+   + + P CL+I  N +  HH     LWA K++  K
Sbjct: 690 PGWCEYCLAHQ-PFLLRSFIRSLPDCLFI--NTQVKHHEHWK-LWARKNWLPK 738


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -3

Query: 341 LSACCTGVLDSPKSGVSASFSKRTPFASFHWAPYWSVISRYTSSYL 204
           +S     VL+    GVS S +  T   ++HW+P+    S +  + L
Sbjct: 260 MSQSIAEVLNPYNKGVSRSLNDATNMETYHWSPFPPQFSTFNDNAL 305


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 343 YPKKLVWRNIILFTYLHIAALYGGYLFLFHAKWQTDLFAYILYVM 477
           Y KKL W  I+ F Y H   +   Y+ L H     ++F+   Y++
Sbjct: 440 YTKKL-WSLIVNFEYTHAPLIPDAYMKLLHLYEFPNIFSKYDYIL 483


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 294 YSRLRTVQHTCTASRQLPKETSLEEYNTFYIPSYCCVVWRLPF 422
           YSRL    H C  SR++  ET+ ++ N        C+ + L +
Sbjct: 329 YSRLLLFAHQCIPSREITFETTSKDGNLLNAIRIFCLYFDLDY 371


>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 708 LTRSQPM*EKRNLVWHYVGRHQSRSIYDACDDHVPNLKQNPEKPR 574
           L R   + +K+N+  H VGR +S    +A   H P     P+ P+
Sbjct: 72  LQRDMAIMKKKNIHGHRVGRVESDKTKEAERQHKPRKPFIPKNPK 116


>SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/16 (68%), Positives = 13/16 (81%), Gaps = 1/16 (6%)
 Frame = -1

Query: 274 EHHLHPFIGR-HIGLL 230
           EHHL PFIG+ HIG +
Sbjct: 126 EHHLVPFIGKIHIGYI 141


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -1

Query: 796 TFFLESKNGISNKSLRSRPLPFLFSSGCFPH*KPANVREKKPRVALCGSASVSEYL 629
           T+ + +KN  SNK+LRS     L +S    + KP ++    P +   GS  +   +
Sbjct: 303 TYSVSTKNSSSNKNLRSSLSKLLSTSNL--NNKPLSLSSTAPSMPSIGSVELGNMI 356


>SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
 Frame = +1

Query: 316 STPVQQADNYPKK--LVWRNIIL---FTYLHIAALYGGYLFLFHAKWQTDLF 456
           S+P  Q  ++ K   +VW ++++   F+Y+  AA Y  +  L+   W+  L+
Sbjct: 64  SSPPPQTQSFLKTVLIVWFSLLVTSYFSYMPFAASYFSFTMLYIWSWKHPLY 115


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 613 IIACIINTPRLMPTHIMPHEVSFLSHWLASSEENIQN*RERARVST*VTYC 765
           I  CI+    LMPT I   ++  L H   +S     N ++     T +T+C
Sbjct: 740 IFTCIVQYILLMPTRIYTEQIYALCHLDDASISKDDN-QQEFNFDTGITHC 789


>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 302 SGVSASFSKRTPFASFHWAPY 240
           SGVS +  +  PF++F+W  Y
Sbjct: 201 SGVSVTLWRDVPFSAFYWWSY 221


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 95  RLIINNTIFTYLASVLLFTNRRIDVICE*CIFFKRLINSYWY 220
           R  + N  FT   + L F N+ + VI   C+F  +   SY++
Sbjct: 663 RKYLANKYFTSNFAPLKFDNQALSVIIWVCVFTCKFAESYFF 704


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 503 HIIMGT*IIQSKVASTCYPYHLQFLGFSG 589
           +II+    I + + + C+P  L F+GFSG
Sbjct: 153 YIILPYLSIPAPMCTECWPSSLTFVGFSG 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,471,667
Number of Sequences: 5004
Number of extensions: 76542
Number of successful extensions: 180
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)