Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00431
         (799 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)              105   5e-23
SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  

>SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)
          Length = 268

 Score =  105 bits (251), Expect = 5e-23
 Identities = 41/71 (57%), Positives = 56/71 (78%)
 Frame = +3

Query: 510 LWAHKSYKAKWPLRVILIIFNSLAFQDSALDWARDHRMHHKYSETDADPHNATRGFFSLT 689
           LWAH+++KAKWPLR+++++ NS+A Q+   +W+RDHR+HHKYSETDADPHNA RGFF   
Sbjct: 27  LWAHRTFKAKWPLRLVIMLMNSMAAQNDIFEWSRDHRVHHKYSETDADPHNAKRGFFFSH 86

Query: 690 LAGF**GKHPE 722
           +      KHP+
Sbjct: 87  VGWLMQRKHPD 97



 Score = 41.1 bits (92), Expect = 0.001
 Identities = 18/42 (42%), Positives = 25/42 (59%)
 Frame = +2

Query: 674 FLFSHIGWLLVRKTSRTEEKGQGSRPK*LIADPILRFQKKGY 799
           F FSH+GWL+ RK      KG+G     L AD ++ FQ++ Y
Sbjct: 82  FFFSHVGWLMQRKHPDVIRKGKGIDLSDLYADSVVMFQRRHY 123


>SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1662

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +3

Query: 297  SRLRTVQHTCTASRQLPKETSLEEYNTFYIPSYCCVVW---RLPFLISCEMANRPICLYI 467
            S +R +Q +C++S Q   +     Y+  Y  SY  +      L F+I CE   + I L I
Sbjct: 1032 SVIRKLQSSCSSSEQRRSKRQ-RNYSVVYGVSYVLITILEINLNFIICCENETKVISLEI 1090

Query: 468  VC 473
            VC
Sbjct: 1091 VC 1092


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,497,870
Number of Sequences: 59808
Number of extensions: 550579
Number of successful extensions: 1118
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)