Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00431
         (799 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.7  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   5.7  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   5.7  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   5.7  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   5.7  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   5.7  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   5.7  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   5.7  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   7.6  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 511 YGHINHTKQSGLYVLSLSS 567
           YG+++H  Q  +Y L L +
Sbjct: 664 YGYVSHANQRNMYKLDLKN 682


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 323 LYSKPTTTQRN*FGGI*YFLHTFILL 400
           L+ +P++T+R     + + LH F LL
Sbjct: 265 LWLEPSSTERMIIANLNFILHLFCLL 290


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 778 KNGISNKSLRSRPLPFLFSSGC 713
           K  IS+ SLRSR   F  +S C
Sbjct: 209 KYAISSNSLRSRSRSFQRTSSC 230


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 778 KNGISNKSLRSRPLPFLFSSGC 713
           K  IS+ SLRSR   F  +S C
Sbjct: 209 KYAISSNSLRSRSRSFQRTSSC 230


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 778 KNGISNKSLRSRPLPFLFSSGC 713
           K  IS+ SLRSR   F  +S C
Sbjct: 209 KYAISSNSLRSRSRSFQRTSSC 230


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 778 KNGISNKSLRSRPLPFLFSSGC 713
           K  IS+ SLRSR   F  +S C
Sbjct: 209 KYAISSNSLRSRSRSFQRTSSC 230


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 778 KNGISNKSLRSRPLPFLFSSGC 713
           K  IS+ SLRSR   F  +S C
Sbjct: 209 KYAISSNSLRSRSRSFQRTSSC 230


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 778 KNGISNKSLRSRPLPFLFSSGC 713
           K  IS+ SLRSR   F  +S C
Sbjct: 209 KYAISSNSLRSRSRSFQRTSSC 230


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 778 KNGISNKSLRSRPLPFLFSSGC 713
           K  IS+ SLRSR   F  +S C
Sbjct: 209 KYAISSNSLRSRSRSFQRTSSC 230


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 357 SLEEYNTFYIPSYCC 401
           SL +YN   IP+ CC
Sbjct: 150 SLSDYNDKPIPASCC 164


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,316
Number of Sequences: 438
Number of extensions: 5307
Number of successful extensions: 18
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)