Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00430
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...    29   0.70 
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    29   0.92 
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      28   1.6  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    26   4.9  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    26   4.9  
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    26   6.5  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   6.5  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    25   8.6  

>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 240 TKASYPVKVSHFSFSPVIDVVYQP-STNRYL 151
           T+   PVK  H+  SPV DV Y P  TN Y+
Sbjct: 219 TRCLTPVKDFHYDDSPVNDVEYHPHHTNLYI 249


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 20/69 (28%), Positives = 33/69 (47%)
 Frame = -2

Query: 425 VCSAPLTDRPRADGNSFNAAVSDVTGSVAVVHRHDGNPVGYLLSLAVALTDERKLFVTL* 246
           V  +P TD PR      +++V++     +V   +D N +G       + TDE +  +TL 
Sbjct: 396 VAESPRTDTPREINGLVDSSVTNGNEKFSVEIMNDSNKIGL---NPKSFTDEEREILTL- 451

Query: 245 LRRKPLTLS 219
            R  P+ LS
Sbjct: 452 FRNPPMRLS 460


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +1

Query: 367 AALKLLPSARGRSVSGALQTSPGLSTPPKDSSLPTDILKILMTFKIST 510
           A  + L S+   S+  +  TSP L    KD+S  +DILK+    K +T
Sbjct: 215 ARFQTLNSSDSASIYSSPYTSPTLEFSKKDASARSDILKMHRRTKSAT 262


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
 Frame = -3

Query: 211 SLFLLPSNRRGXPALYQSVSSRGGTYRSRVLGSMDTTGPHLCGS----LAQRRLPIFPLT 44
           SL ++P N  G   LY  +    G Y   V+   D T   L  +    L  R + I+P+T
Sbjct: 667 SLCIIPMNVNGVSTLYLHIGLMNGVYLRTVI---DVTSGQLLDTRTRFLGPRAVKIYPIT 723

Query: 43  V 41
           +
Sbjct: 724 M 724


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
 Frame = +1

Query: 247 YNVTNSLRSSVRATARESKYPTGFPSCLWTTATLPVTSETAAL-KLLPS-ARGRSVSGAL 420
           YN ++ L SSV ++A  S   +  P+ + T+ + PVT  +++L    PS +   + +G+ 
Sbjct: 223 YNTSSFLPSSVISSASLSS-SSVLPTSIITSTSTPVTVSSSSLSSFTPSYSTNLTTTGST 281

Query: 421 QT--SPGLSTPP---KDSSLPTDILKILMTFKIST 510
            T  S  +S+ P     S +PT +   + +F  S+
Sbjct: 282 TTTGSATVSSSPFYSNSSVIPTSVPSSVSSFTSSS 316


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 431 GDVCSAPLTDRPRADGNSFNAAVSDVTGSVAVVHRH-DGNPVGYLLS 294
           GD+ S PL D P  D  +      +  G++ + +   D N + Y+L+
Sbjct: 258 GDMISVPLQDSPNPDFPTVKFPNPEEEGALDLAYEQADANGISYVLA 304


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 247 YNVTNSLRSSVRATARESKYPTGFPSCLWTTATL 348
           Y V NS  + +    R+S  P   PSC WT+ +L
Sbjct: 500 YTVFNS-PTIIEKNFRQSVGPKPIPSCHWTSVSL 532


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +1

Query: 316 FPSCLWTTATLPVTSETAALKLLPSARGRSVSGALQTSPGLSTPPKDSSLPTDILKIL 489
           F + L+    +  T E A     PS+       A    P +S+P K  S  T +LK++
Sbjct: 307 FFNLLYEKFVIGKTKEPAKPVPQPSSNEPPAPSAENKQPSVSSPEKKESPATHLLKVI 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.130    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,001,682
Number of Sequences: 5004
Number of extensions: 64426
Number of successful extensions: 216
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)