Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00430
(741 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1060 - 30023407-30023553,30024274-30024390,30024958-300251... 36 0.045
06_03_0105 + 16693771-16693780,16693833-16693876,16694274-166943... 30 2.2
01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,467... 29 2.9
03_01_0170 + 1389759-1391159 29 3.9
12_02_0527 + 20047027-20047281,20048169-20048390,20048996-200493... 29 5.1
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 28 6.8
05_06_0104 - 25603568-25603867,25603965-25604162,25604247-256045... 28 9.0
05_05_0219 + 23371561-23371680,23371799-23372207,23374520-233746... 28 9.0
>03_05_1060 -
30023407-30023553,30024274-30024390,30024958-30025129,
30026116-30026198,30026299-30026917,30027157-30027280,
30027637-30027745,30028214-30028399,30028716-30028763,
30028808-30028979,30029034-30029209
Length = 650
Score = 35.5 bits (78), Expect = 0.045
Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 1/135 (0%)
Frame = +1
Query: 67 ASEPDYHTNEDLLYPYSPIP-YFGMYHLVKIPIGRGLVXHVDYWGEGKVTNLDRVRGFRR 243
AS P Y ++ + PY I +FG+ + G G V EG++T L R G R
Sbjct: 248 ASSPIYEVSQ-INRPYGQIKRWFGIRLYYALRDGTGSSNVVASMSEGRLTTLLRSIGIGR 306
Query: 244 SYNVTNSLRSSVRATARESKYPTGFPSCLWTTATLPVTSETAALKLLPSARGRSVSGALQ 423
+ T + + S R ++++ PT C +T+ + SA R+ +
Sbjct: 307 ERSNTGTNKLSCRGPRKKNR-PTKRLDCRPPVSTVDTAGAPLEGEEKASAANRAPVSGGR 365
Query: 424 TSPGLSTPPKDSSLP 468
SPGL P LP
Sbjct: 366 RSPGLKWPWLCPDLP 380
>06_03_0105 +
16693771-16693780,16693833-16693876,16694274-16694348,
16694548-16694784,16694880-16695050,16695137-16695250
Length = 216
Score = 29.9 bits (64), Expect = 2.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 354 NWKCRCRPQTRRESCWVF 301
N+ CRCRP+ RR W +
Sbjct: 5 NYVCRCRPENRRNKGWAY 22
>01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,
4675953-4676072,4676185-4676313,4676394-4676442,
4676899-4676970,4677574-4677707,4677798-4677915,
4678332-4678541,4678630-4678942,4679539-4679632,
4679854-4679962,4680243-4680514,4680597-4680724,
4680832-4681066,4681570-4681758,4681845-4682128,
4682218-4682398,4682486-4682728,4682904-4682986,
4683119-4683227,4687996-4688091,4688675-4688764,
4688881-4689129,4689233-4689412,4690179-4690250,
4691385-4691474,4691605-4691705,4691794-4691959
Length = 1757
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/60 (21%), Positives = 27/60 (45%)
Frame = -1
Query: 255 YIVAPTKASYPVKVSHFSFSPVIDVVYQPSTNRYLHEVVHTEVGYWGVWIQQVLICVVVW 76
Y + P S P + H + ++VY+ + NR++ E+ W ++CV+ +
Sbjct: 944 YFMGPNTFSEPWHLPHTPPEQISEIVYEDAFNRFVDEINTLAAYQWWEGSIHSILCVLAY 1003
>03_01_0170 + 1389759-1391159
Length = 466
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 304 ICFPLLWPLLTSANCSLHCSSDESLLPCQG*SLFLLPSNRRGXP 173
+ PLL LL SA+ + +D LL C + +LP RR P
Sbjct: 5 LAVPLLLCLLASASAARFAPADNHLLACGATAPAVLPDGRRFVP 48
>12_02_0527 +
20047027-20047281,20048169-20048390,20048996-20049354,
20049706-20049766,20049911-20050018
Length = 334
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +1
Query: 397 GRSVSGALQTSPGLSTPPKDSSLPTDILKILMTFKIST*VGKKGLYYGAGY 549
G + L S L TPP +++ L +M +G ++YGAGY
Sbjct: 194 GAMFTAFLSVSSALGTPPLIAAMVLSFLSNIMGGLTHYGIGSAPVFYGAGY 244
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 231 SYPVKVSHFSFSPVIDVVYQPSTNRYLHEVVHTEVGYWGVWIQQVLI 91
S P F + D++Y STN + + T + W WI +VLI
Sbjct: 1085 SLPFASRAFQAHAIQDLLYLASTNNE-NRIALTSIAEWPEWILEVLI 1130
>05_06_0104 -
25603568-25603867,25603965-25604162,25604247-25604526,
25604615-25605419,25605518-25606673
Length = 912
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 385 PSARGRSVSGALQTSPGLSTPPKDSSLPTDILKIL 489
P + R VSGAL+ P S PP T ++K++
Sbjct: 61 PDSFERVVSGALKKLPSQSPPPDSVPASTALIKVI 95
>05_05_0219 +
23371561-23371680,23371799-23372207,23374520-23374635,
23375385-23375855
Length = 371
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 184 VDYWGEGKVTNLDRVRGFRRSYNVTNSLRSSVRATARESK 303
VD +GK+ L +GF R N+T S + V T + K
Sbjct: 195 VDVVIDGKMLPLQLAKGFSRQVNITYSNPNGVEITVKSGK 234
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.130 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,543,557
Number of Sequences: 37544
Number of extensions: 455621
Number of successful extensions: 1396
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1396
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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