Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00430
(741 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0) 31 0.74
SB_21366| Best HMM Match : YL1 (HMM E-Value=6.4) 30 2.3
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89) 30 2.3
SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10) 29 3.0
SB_37561| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22) 29 4.0
SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17) 29 5.2
SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23) 29 5.2
SB_52395| Best HMM Match : TP2 (HMM E-Value=7.8) 29 5.2
SB_51198| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_14513| Best HMM Match : rve (HMM E-Value=0.14) 28 6.9
>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
Length = 1291
Score = 31.5 bits (68), Expect = 0.74
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Frame = -3
Query: 409 LLIGPVLMVTVL--TPPSLM*LEVSLSSTDTTGILLGICFPLLWPLLTSANCSLHCSSDE 236
+L V VT+L T S++ L +++ S I + LL P S++ SL CS
Sbjct: 1156 ILFITVFSVTILFITVFSVIILFITVFSVIILFITVFSIIILLLPCSPSSSFSLPCSPSS 1215
Query: 235 SLLPCQG*SLFLLPSNRRGXPALYQSVSSRGGTYRSRVL 119
LLPC S FLLP + P+ + S ++ RVL
Sbjct: 1216 FLLPCSP-SSFLLPCS----PSSFSLPCSPSSSFYYRVL 1249
>SB_21366| Best HMM Match : YL1 (HMM E-Value=6.4)
Length = 365
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -1
Query: 294 PCCGPY*RAQTVRYIVAPTKASYPVKVSHFSFSPVIDVVYQPSTN 160
P GPY R++ V +++ + + P V H F+PV V P+TN
Sbjct: 14 PAKGPY-RSE-VTQVMSASDSHQPTPVKHVMFNPVTPDVSPPTTN 56
>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
Length = 1494
Score = 29.9 bits (64), Expect = 2.3
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Frame = +1
Query: 259 NSLRSSVRATARESKYPT--GFPSCLWTTATLP---VTSETAALKLLPSARGRSVSGALQ 423
+SL + +++ S +PT PS T+++LP +TS ++ L S+ S+S L
Sbjct: 452 SSLSDFLTSSSSLSVFPTPSSLPSDFLTSSSLPSDFLTSSSSLSDFLTSSS--SLSDFLT 509
Query: 424 TSPGLSTPPKDSSLPTDIL 480
+S LS SSLP+D L
Sbjct: 510 SSSSLSVFYTSSSLPSDFL 528
Score = 29.5 bits (63), Expect = 3.0
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = +1
Query: 298 SKYPTGFPSCLWTTATLP---VTSETAALKLLPSARGRSVSGALQTSPGLSTPPKDSSLP 468
S + T PS T+++LP +TS ++ L S+ S+S L +S LS SSLP
Sbjct: 712 SDFLTSLPSDFLTSSSLPSDFLTSSSSLSDFLTSSS--SLSDFLTSSSSLSVFYTSSSLP 769
Query: 469 TDIL 480
+D L
Sbjct: 770 SDFL 773
Score = 27.9 bits (59), Expect = 9.1
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 13/88 (14%)
Frame = +1
Query: 256 TNSLRSSVRATARESKYPTG--FPSCLWTTATLPVTSETAALKL--------LPS---AR 396
++SL + +++ S +PT PS T+++LP T++ L LPS
Sbjct: 846 SSSLSDFLTSSSSLSVFPTSSSLPSDFLTSSSLPSDFLTSSSSLSVFPTSSSLPSDFLTS 905
Query: 397 GRSVSGALQTSPGLSTPPKDSSLPTDIL 480
S+S L +S LS P SSLP+D +
Sbjct: 906 SSSLSDFLTSSSSLSVFPTSSSLPSDFV 933
>SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10)
Length = 718
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 494 HSKSRRELVKRA-YTMEPGTNCPQT*RPRRNSAQKWSLPTQGQSTIT 631
H KS E + Y GT+CP R + NS++ S+ +G +IT
Sbjct: 659 HEKSMSESFSESRYERTNGTDCPSISREKNNSSKLHSVNVKGGRSIT 705
>SB_37561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1209
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -2
Query: 497 NVIRIFRISVGNDESFGGVDNP--GDVCSAP 411
N +R F + +G D + GGV NP GDV + P
Sbjct: 140 NRLRSFELRIGEDGTRGGVSNPKCGDVYAIP 170
>SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)
Length = 1249
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/80 (23%), Positives = 38/80 (47%)
Frame = +1
Query: 256 TNSLRSSVRATARESKYPTGFPSCLWTTATLPVTSETAALKLLPSARGRSVSGALQTSPG 435
++S ++S+ + + PS +++ + TS ++A L PS + S LQT+
Sbjct: 728 SSSFQTSIYPSQSSIFRTSVLPSSYFSSTVILETSSSSASSLAPSPTATTTS-TLQTTEP 786
Query: 436 LSTPPKDSSLPTDILKILMT 495
STP +L + ++ T
Sbjct: 787 SSTPSTSPALTVTMTTVIAT 806
>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
Length = 761
Score = 28.7 bits (61), Expect = 5.2
Identities = 34/149 (22%), Positives = 67/149 (44%)
Frame = +1
Query: 295 ESKYPTGFPSCLWTTATLPVTSETAALKLLPSARGRSVSGALQTSPGLSTPPKDSSLPTD 474
ES+ P+ PS + +++ + + ++ + +VS QTS +TPP ++S
Sbjct: 230 ESEAPSEIPSLSPPPTAVGYSTDKSVIDMVMA----TVSTGSQTSLNQTTPPNETS---- 281
Query: 475 ILKILMTFKIST*VGKKGLYYGAGYELPADLKTQTEFSTKMVFADARSINDHLYNLVTGG 654
+IL +ST GL + LP +L + FST++ +N L N +
Sbjct: 282 -TEILSNETLST-----GL--PSNQTLPTELSSNETFSTEL------PLNQTLPNELPSN 327
Query: 655 DYINAVKTVRSSTTTRAPASVATSSRGSS 741
+ ++ V + +T +P++ S+ S
Sbjct: 328 ETLSTVAPSNETISTESPSNETISTESPS 356
>SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)
Length = 1153
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +1
Query: 334 TTATLPVTSETAALKLLPSARGRSVSGALQTSPGLST 444
T+ P +++ +A+ S RG+ V+GA+QTS LST
Sbjct: 874 TSVAAPTSAQYSAVTS-SSPRGQGVAGAIQTSTPLST 909
>SB_52395| Best HMM Match : TP2 (HMM E-Value=7.8)
Length = 149
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +1
Query: 319 PSCLWTTATLPVTSETAALKLLPSARGRSVSGALQTSPGLSTPPKDSSLPTDI 477
P W T +T+E A K + G S G S PPK +LP +I
Sbjct: 9 PRKFWPQKTSRLTTEILATKNIVPCHGNSGPQKYAPYHGNSGPPKHRALPPEI 61
>SB_51198| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1627
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 301 CFPLLWPLLTSANCSLHCSSDESLLPCQG*SLFLLPSNRR 182
C+P L LL +NC + SS S + C + +L NRR
Sbjct: 521 CYPALKKLLLDSNCFVEVSSLPSEVACNILTSWLSNDNRR 560
>SB_14513| Best HMM Match : rve (HMM E-Value=0.14)
Length = 1101
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 44 RQRKNGKPPLSQTTTQMRTCC 106
++RK P LSQ+ TQ+ +CC
Sbjct: 787 KRRKTPAPALSQSATQLASCC 807
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.130 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,196,195
Number of Sequences: 59808
Number of extensions: 507545
Number of successful extensions: 1679
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1671
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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