Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00430
(741 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g15690.2 68416.m01989 biotin carboxyl carrier protein of acet... 32 0.46
At5g16800.2 68418.m01967 GCN5-related N-acetyltransferase (GNAT)... 31 0.80
At5g16800.1 68418.m01968 GCN5-related N-acetyltransferase (GNAT)... 31 0.80
At1g52670.1 68414.m05947 biotin/lipoyl attachment domain-contain... 30 1.9
At4g14490.1 68417.m02234 forkhead-associated domain-containing p... 29 2.4
At4g06479.1 68417.m00885 hypothetical protein 28 5.7
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 28 5.7
At1g02080.1 68414.m00130 transcriptional regulator-related conta... 28 5.7
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s... 28 7.5
At4g32920.1 68417.m04685 glycine-rich protein 28 7.5
At5g12860.1 68418.m01476 oxoglutarate/malate translocator, putat... 27 9.9
>At3g15690.2 68416.m01989 biotin carboxyl carrier protein of
acetyl-CoA carboxylase-related contains weak similarity
to Biotin carboxyl carrier protein of acetyl-CoA
carboxylase, chloroplast precursor (BCCP)
(Swiss-Prot:Q42533) [Arabidopsis thaliana]
Length = 263
Score = 31.9 bits (69), Expect = 0.46
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -2
Query: 362 SDVTGSVAVVHRHDGNPVGY---LLSLAVALTDERKL 261
SDVTG V + R DG PVGY L+S+ + +KL
Sbjct: 226 SDVTGEVVKILREDGEPVGYNDALISILPSFPGIKKL 262
>At5g16800.2 68418.m01967 GCN5-related N-acetyltransferase (GNAT)
family protein very low similarity to SP|P39909
Spermine/spermidine acetyltransferase (EC 2.3.1.57)
{Bacillus subtilis}; contains Pfam profile PF00583:
acetyltransferase, GNAT family
Length = 270
Score = 31.1 bits (67), Expect = 0.80
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -2
Query: 533 YKPFLPTHVEILNVIR--IFRISVGNDESFGGVDNPGDVCSAPLTDRPRADGNS 378
++P P+ +E L I IF I E F V N GD+ S DR R DG+S
Sbjct: 27 FRPINPSDLERLEQIHRDIFPIRY-ESEFFQNVVNGGDIVSWAAVDRSRPDGHS 79
>At5g16800.1 68418.m01968 GCN5-related N-acetyltransferase (GNAT)
family protein very low similarity to SP|P39909
Spermine/spermidine acetyltransferase (EC 2.3.1.57)
{Bacillus subtilis}; contains Pfam profile PF00583:
acetyltransferase, GNAT family
Length = 236
Score = 31.1 bits (67), Expect = 0.80
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -2
Query: 533 YKPFLPTHVEILNVIR--IFRISVGNDESFGGVDNPGDVCSAPLTDRPRADGNS 378
++P P+ +E L I IF I E F V N GD+ S DR R DG+S
Sbjct: 27 FRPINPSDLERLEQIHRDIFPIRY-ESEFFQNVVNGGDIVSWAAVDRSRPDGHS 79
>At1g52670.1 68414.m05947 biotin/lipoyl attachment domain-containing
protein similar to SP|Q06881 Biotin carboxyl carrier
protein of acetyl-CoA carboxylase (BCCP) {Anabaena sp.};
contains Pfam profile PF00364: Biotin-requiring enzyme
Length = 274
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 362 SDVTGSVAVVHRHDGNPVGYLLSLAVAL 279
SDV+G + + R DG PVGY +L L
Sbjct: 237 SDVSGEIVKILREDGEPVGYNDALITVL 264
>At4g14490.1 68417.m02234 forkhead-associated domain-containing
protein / FHA domain-containing protein contains Pfam
domain, PF00498: forkhead-associated (FHA) domain
Length = 386
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Frame = +3
Query: 540 SRVRTARRLEDPDGIQHKNGLCRRKVNQR------SLVQLGYGRRLHQRGEDCAQLDDNQ 701
SRVR R++ED + + +GL V + +Q + EDCA +++N
Sbjct: 156 SRVRKVRKIEDSEKLGITDGLQEDLVEKNGSFRNVESIQSSSVNLIKVEMEDCAMVEENL 215
Query: 702 GSGVCRDVVSR 734
G G+ + V S+
Sbjct: 216 GRGLKKRVSSK 226
>At4g06479.1 68417.m00885 hypothetical protein
Length = 370
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 31 QVKTPSEEKWEAASEPDYHTNEDLLYPYSPIPYFGMY 141
++ TP++ E S D H E+ LYP IPY Y
Sbjct: 289 KLATPAKRPCEICSHTD-HPTEECLYPPQTIPYTDDY 324
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 88 TNEDLLYPYSPIPYFGMYHLVKIPIGRG 171
T EDL+ P+S FG VKIP+G+G
Sbjct: 339 TEEDLMQPFSD---FGEVVSVKIPVGKG 363
>At1g02080.1 68414.m00130 transcriptional regulator-related contains
Pfam PF04054: CCR4-Not complex component, Not1; contains
TIGRFAM TIGR01612: reticulocyte binding protein; similar
to General negative regulator of transcription subunit 1
(SP:P25655) {Saccharomyces cerevisiae}; Location of ESTs
gb|T44328 and gb|AA395265
Length = 2378
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -2
Query: 515 THVEILNVIR--IFRISVGNDESFGGVDNPGDVCSAP 411
TH E++ VI + RIS GN ES V +PG S P
Sbjct: 804 THPELVTVIEQALSRISSGNLESDASVSHPGPSQSFP 840
>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
[Drosophila melanogaster]
Length = 926
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 548 TNCPQT*RPRRNSAQKWSLPTQGQSTITCTT 640
TNCP RNS + P +ST++C T
Sbjct: 778 TNCPSRVPASRNSRPTATNPRNDESTVSCNT 808
>At4g32920.1 68417.m04685 glycine-rich protein
Length = 1432
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = -1
Query: 255 YIVAPTKASYPVKVSHFSFSPVIDVVYQPSTNRYLHEVVHTEVGYWGVWIQQVLICVVVW 76
Y + P S P +SH + ++VY+ + N ++ EV W +++ V+V+
Sbjct: 949 YFLGPNTFSEPWHLSHTPPEEIKEIVYEAAFNGFVDEVNVIAAYQWWEGAIYIMLSVLVY 1008
>At5g12860.1 68418.m01476 oxoglutarate/malate translocator, putative
similar to 2-oxoglutarate/malate translocator precursor,
spinach, SWISSPROT:Q41364
Length = 557
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +1
Query: 397 GRSVSGALQTSPGLSTPPKDSSLPTDILKILMTFKIST*VGKKGLYYGAGY 549
G + L S L TPP ++L L LM +G ++YGA Y
Sbjct: 472 GAMFTAFLSVSTALGTPPYFAALVLAFLSNLMGGLTHYGIGSAPIFYGANY 522
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.130 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,084,334
Number of Sequences: 28952
Number of extensions: 353484
Number of successful extensions: 1167
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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