Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00429
         (739 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.74 
SB_44756| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)                    29   3.0  
SB_21078| Best HMM Match : P120R (HMM E-Value=0.44)                    29   5.2  
SB_57310| Best HMM Match : rve (HMM E-Value=2.5e-25)                   29   5.2  
SB_33703| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)                   28   9.1  

>SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2346

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +3

Query: 102  DRPNEPLITPKGENNSVFQLTEQFLTEDYANNGIELNNRFGDDASEKIPLKTSANFQ 272
            D P   L++P    N+ +        + Y NN  +      D+AS KIP KT AN Q
Sbjct: 1244 DHPTR-LLSPNAHGNTGYDQGSSITNKSYQNNP-KRTQEVHDEASIKIPTKTFANGQ 1298


>SB_44756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/63 (26%), Positives = 25/63 (39%)
 Frame = +3

Query: 132 KGENNSVFQLTEQFLTEDYANNGIELNNRFGDDASEKIPLKTSANFQNLKLQLNYPRTLN 311
           K   N   + TE + T+   NN  +    +   A+EK   K + NF + K   NY     
Sbjct: 164 KATENYSTKATENYSTKSKENNSTKATENYSTKATEKYSTKATENF-STKATENYSTKAT 222

Query: 312 SHY 320
             Y
Sbjct: 223 EKY 225


>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
          Length = 2128

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +3

Query: 102 DRPNEPLITPKGENNSVFQLTEQFLTEDYANNGIELNNRFGDDASEKIPLKTS 260
           D+P+  +  P+G    +     QF T DY    +  + +  D ++  IPL TS
Sbjct: 298 DKPSTVVPLPQGAEVKLQDKRRQFETLDYKAQRLHSSGKSFDSSANSIPLSTS 350


>SB_21078| Best HMM Match : P120R (HMM E-Value=0.44)
          Length = 585

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 582 YSTRRSTHTYYHSTRLHCDGLRRRTPPCVLARRYR-HQPASLSLAFGLPVYGQ 737
           YS++R  H      R H  G  ++   C++  R + H+PAS+    G   +G+
Sbjct: 4   YSSKRMVHRTVTFFRDHLQGAAKKELTCIVFNRDKIHRPASVFDRVGFESFGR 56


>SB_57310| Best HMM Match : rve (HMM E-Value=2.5e-25)
          Length = 440

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 353 LLGVLMDVPENELQDLLSTCAFARVNLNPQLFNYCYSVALMHRRDTRKV 499
           LL +L  +PEN+          + V  NP+L  Y  +V L  ++  RK+
Sbjct: 384 LLAMLRTLPENQKSKCADMGRSSEVESNPKLPKYKATVRLQEQQSRRKI 432


>SB_33703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 745

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 314 SLFLPKHQEMANELLGVLMDVPENELQDLLS 406
           ++F    QE  NEL   L D+P   L DLL+
Sbjct: 164 TIFKSSKQEQVNELSEALSDIPSEVLFDLLN 194


>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
          Length = 2748

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 147 SVFQLTEQFLTEDYANNGIELNNRFGDD 230
           S +Q+T QF++ +Y N    L   FGDD
Sbjct: 126 SAYQITVQFISSNYGNFNQRLVFDFGDD 153


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,725,280
Number of Sequences: 59808
Number of extensions: 452959
Number of successful extensions: 1200
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)