Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00427
         (456 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...    88   7e-19
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...    84   8e-18
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    26   2.4  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    25   7.3  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    24   9.6  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    24   9.6  

>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 87.8 bits (208), Expect = 7e-19
 Identities = 41/80 (51%), Positives = 47/80 (58%)
 Frame = +2

Query: 2   LRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFC 181
           LRGHVS                  AGG  H R + DKYHPGYFGK+GMR FH  KN  + 
Sbjct: 11  LRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRRFHLMKNPLWR 70

Query: 182 PVLNLDKLWTLVSEQTRLKY 241
           P +NLD+LWTLV  +TR KY
Sbjct: 71  PTVNLDRLWTLVPNETREKY 90


>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score = 84.2 bits (199), Expect = 8e-18
 Identities = 39/80 (48%), Positives = 46/80 (57%)
 Frame = +2

Query: 2   LRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFC 181
           LRGHVS                  AGG  H R + DKYHPGYFGK+GMR FH  KN  + 
Sbjct: 11  LRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRRFHLMKNPLWR 70

Query: 182 PVLNLDKLWTLVSEQTRLKY 241
           P +NLD+LWTL+  + R KY
Sbjct: 71  PTVNLDRLWTLLPNEARDKY 90


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 290 PALTILMTGTLPLEQMHTSASSVQRLMSKAYLSSKLDRNS 171
           P L     G LPL +     +S +R++S A + S LD+ +
Sbjct: 116 PQLVKSDKGVLPLNKQSDILNSYERVLSNASVDSALDKKA 155


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +2

Query: 182 PVLNLDKLWTLVSEQTRLKYASAPVARSPSSILSKLDTTS 301
           PV N D   T +S  T  K AS  +  SPS+ L    TTS
Sbjct: 109 PVSN-DASMTAISTFTSGKEASYAIQASPSTFLPDSTTTS 147


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 297 VVSSFDNIDDGDLATGADAYFSLVCSE 217
           ++ SF  ++D DL    D  + L+C +
Sbjct: 836 LIESFFEVEDNDLTIQKDELYHLLCDQ 862


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 22/99 (22%), Positives = 39/99 (39%)
 Frame = -2

Query: 413 ADSTQAPPTSLIFFSADFEKNFAFTMTGCLGSLPLPSNL*YPALTILMTGTLPLEQMHTS 234
           A  T    +S I+ S+      + +      +  L SN    + + + T  +P       
Sbjct: 498 ATDTSVQTSSAIYDSSSTSNIQSSSSVYASSTGALSSNSLSSSTSSVSTSYIPNASSSVY 557

Query: 233 ASSVQRLMSKAYLSSKLDRNSCSF*SGNFSYQVCQSIQD 117
           ASS + L S +  SS    ++    S + SY+V  +  D
Sbjct: 558 ASSTEALSSNSLSSSTSSASTSYIPSASSSYEVASNSSD 596


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,604,468
Number of Sequences: 5004
Number of extensions: 30731
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)