Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00427
(456 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0563 + 4134954-4135388 88 3e-18
07_03_1250 - 25183375-25183815 86 1e-17
03_04_0027 + 16593133-16593573 86 1e-17
09_04_0302 + 16501020-16501049,16501568-16501659,16502063-165021... 27 5.4
08_02_1146 + 24678142-24678258,24678550-24678587,24678997-246790... 27 5.4
02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486 27 5.4
04_03_1020 - 21761297-21761555,21761630-21761739,21762402-217626... 27 7.2
03_05_0070 - 20478396-20478505,20478605-20478780,20481162-204812... 27 7.2
12_01_0418 - 3304741-3304904,3305579-3305762,3307254-3307347,330... 27 9.5
03_05_0422 - 24076917-24077125,24077209-24077266,24077350-240773... 27 9.5
01_06_0884 + 32715963-32716284,32716837-32717567 27 9.5
>02_01_0563 + 4134954-4135388
Length = 144
Score = 88.2 bits (209), Expect = 3e-18
Identities = 39/84 (46%), Positives = 48/84 (57%)
Frame = +2
Query: 5 RGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCP 184
RGHVS NAGG HHHRI DKYHPGYFGK+GMR FH N+ CP
Sbjct: 12 RGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHRLSNRFHCP 71
Query: 185 VLNLDKLWTLVSEQTRLKYASAPV 256
+N+++LW++V + APV
Sbjct: 72 AVNVERLWSMVPAEAGAGAGKAPV 95
>07_03_1250 - 25183375-25183815
Length = 146
Score = 86.2 bits (204), Expect = 1e-17
Identities = 38/82 (46%), Positives = 49/82 (59%)
Frame = +2
Query: 5 RGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCP 184
RGHVS NAGG HHHRI DKYHPGYFGK+GMR FH +NK + P
Sbjct: 12 RGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHRLRNKFYSP 71
Query: 185 VLNLDKLWTLVSEQTRLKYASA 250
+N+++LW++V + + A A
Sbjct: 72 AVNVERLWSMVPAEQAAEAAGA 93
>03_04_0027 + 16593133-16593573
Length = 146
Score = 85.8 bits (203), Expect = 1e-17
Identities = 40/88 (45%), Positives = 50/88 (56%)
Frame = +2
Query: 5 RGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCP 184
RGHVS NAGG HHHRI DKYHPGYFGK+GMR FH N+ CP
Sbjct: 12 RGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLSNRFHCP 71
Query: 185 VLNLDKLWTLVSEQTRLKYASAPVARSP 268
+N+++LW++V K A A ++P
Sbjct: 72 AVNVERLWSMVPTD---KAAEAGAGKAP 96
>09_04_0302 +
16501020-16501049,16501568-16501659,16502063-16502198,
16502297-16502727,16502950-16503028
Length = 255
Score = 27.5 bits (58), Expect = 5.4
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 98 FCDGAHHQHYHDLLDAYG 45
+C+G HH H H D+ G
Sbjct: 132 YCNGGHHHHGHQCYDSVG 149
>08_02_1146 +
24678142-24678258,24678550-24678587,24678997-24679012,
24679874-24680002,24680073-24680229,24680337-24680530,
24680668-24680916,24681196-24681309,24681949-24681990,
24682402-24682572,24682932-24683104,24683378-24683624,
24684046-24684130,24684401-24684510,24684714-24684977,
24685885-24685950,24686431-24686525,24686780-24686858
Length = 781
Score = 27.5 bits (58), Expect = 5.4
Identities = 9/27 (33%), Positives = 12/27 (44%)
Frame = +3
Query: 261 GPRHQYCQSWILQVARQRQTPQTTCHS 341
GP H WI + +Q P+ HS
Sbjct: 258 GPMHNAADKWITEFGKQNNNPEEWAHS 284
>02_02_0525 -
11182043-11182080,11182386-11182511,11182760-11183486
Length = 296
Score = 27.5 bits (58), Expect = 5.4
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 81 PPALPRPPGCLRCFPIRPCP 22
PPA P PP L C P+ P P
Sbjct: 10 PPAPPSPPPALPCDPMPPPP 29
>04_03_1020 -
21761297-21761555,21761630-21761739,21762402-21762635,
21762710-21762817,21762910-21762969,21763549-21763624,
21763710-21763870,21764485-21764547,21764657-21764744,
21765062-21765592,21766344-21766783
Length = 709
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = -1
Query: 84 SPP-ALPRPPGCLRCFPIRPCP 22
SPP LP PPG C P+ P P
Sbjct: 263 SPPHPLPLPPGPATCSPLPPSP 284
>03_05_0070 -
20478396-20478505,20478605-20478780,20481162-20481265,
20481346-20481504,20481718-20481857,20482222-20482311,
20482902-20482970,20484295-20484516,20486175-20486293,
20486377-20486492,20488058-20488146,20488790-20488883
Length = 495
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = +3
Query: 270 HQYCQSWILQVARQRQTPQTTCHSKSKVLLKISREENQGCGWC 398
H Y S ILQ QR + + V + I N+G WC
Sbjct: 437 HTYLDSAILQHQLQRLSEHNLLKATPSVFVVIQAIVNEGAVWC 479
>12_01_0418 -
3304741-3304904,3305579-3305762,3307254-3307347,
3308530-3308882,3309140-3309274,3309354-3309392,
3309587-3309652,3309739-3309834,3310291-3310527,
3310602-3310722,3310854-3310889,3313062-3313159,
3313298-3313591,3313842-3313904,3314280-3314438,
3314557-3314655
Length = 745
Score = 26.6 bits (56), Expect = 9.5
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -2
Query: 239 TSASSVQRLMSKAYLSSKLDRNSCSF*SGNFSYQVCQSIQDGTCP 105
T+ SSV ++A+ KL + SF +GN S+ ++ +G+ P
Sbjct: 325 TTDSSVNGWKAEAHEPLKLFQKGSSFLAGNLSFSRARASLEGSAP 369
>03_05_0422 -
24076917-24077125,24077209-24077266,24077350-24077399,
24077494-24077754,24077837-24078230,24081256-24081366,
24082255-24082596
Length = 474
Score = 26.6 bits (56), Expect = 9.5
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 77 GGEHHHRINMDKYH 118
GG HHH+ NM K H
Sbjct: 313 GGGHHHKQNMQKQH 326
>01_06_0884 + 32715963-32716284,32716837-32717567
Length = 350
Score = 26.6 bits (56), Expect = 9.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 90 WCSPPALPRPPGCLRCFP 37
WC PA+P+ RCFP
Sbjct: 186 WCPVPAMPQVDWEFRCFP 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,929,528
Number of Sequences: 37544
Number of extensions: 218116
Number of successful extensions: 703
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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