Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00427
         (456 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14968-1|AAA85656.1|  148|Homo sapiens ribosomal protein L27a pr...   115   9e-26
BC020169-1|AAH20169.1|  147|Homo sapiens Unknown (protein for IM...   115   9e-26
BC005326-1|AAH05326.1|  148|Homo sapiens ribosomal protein L27a ...   115   9e-26
AJ400879-2|CAC35388.1|  106|Homo sapiens ribosomal protein L27a ...   115   9e-26
AB020236-1|BAA77361.1|  148|Homo sapiens ribosomal protein L27A ...   115   9e-26
BC066326-1|AAH66326.1|  148|Homo sapiens ribosomal protein L27a ...   112   6e-25
AB007178-1|BAA25837.1|   34|Homo sapiens ribosomal protein L27a ...    37   0.038
AK126225-1|BAC86496.1|  139|Homo sapiens protein ( Homo sapiens ...    29   7.6  
AY358091-1|AAQ88458.1|  126|Homo sapiens VFLL3057 protein.             29   10.0 

>U14968-1|AAA85656.1|  148|Homo sapiens ribosomal protein L27a
           protein.
          Length = 148

 Score =  115 bits (276), Expect = 9e-26
 Identities = 49/89 (55%), Positives = 60/89 (67%)
 Frame = +2

Query: 2   LRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFC 181
           LRGHVS                 NAGG HHHRIN DKYHPGYFGK+GM+++H ++N++FC
Sbjct: 11  LRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFC 70

Query: 182 PVLNLDKLWTLVSEQTRLKYASAPVARSP 268
           P +NLDKLWTLVSEQTR+  A      +P
Sbjct: 71  PTVNLDKLWTLVSEQTRVNAAKNKTGAAP 99



 Score = 36.7 bits (81), Expect = 0.038
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +1

Query: 253 SGKVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 414
           +G  P+I++V++           PKQPVIV               VGGACVL A
Sbjct: 95  TGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148


>BC020169-1|AAH20169.1|  147|Homo sapiens Unknown (protein for
           IMAGE:3543815) protein.
          Length = 147

 Score =  115 bits (276), Expect = 9e-26
 Identities = 49/89 (55%), Positives = 60/89 (67%)
 Frame = +2

Query: 2   LRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFC 181
           LRGHVS                 NAGG HHHRIN DKYHPGYFGK+GM+++H ++N++FC
Sbjct: 10  LRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFC 69

Query: 182 PVLNLDKLWTLVSEQTRLKYASAPVARSP 268
           P +NLDKLWTLVSEQTR+  A      +P
Sbjct: 70  PTVNLDKLWTLVSEQTRVNAAKNKTGAAP 98



 Score = 36.7 bits (81), Expect = 0.038
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +1

Query: 253 SGKVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 414
           +G  P+I++V++           PKQPVIV               VGGACVL A
Sbjct: 94  TGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 147


>BC005326-1|AAH05326.1|  148|Homo sapiens ribosomal protein L27a
           protein.
          Length = 148

 Score =  115 bits (276), Expect = 9e-26
 Identities = 49/89 (55%), Positives = 60/89 (67%)
 Frame = +2

Query: 2   LRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFC 181
           LRGHVS                 NAGG HHHRIN DKYHPGYFGK+GM+++H ++N++FC
Sbjct: 11  LRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFC 70

Query: 182 PVLNLDKLWTLVSEQTRLKYASAPVARSP 268
           P +NLDKLWTLVSEQTR+  A      +P
Sbjct: 71  PTVNLDKLWTLVSEQTRVNAAKNKTGAAP 99



 Score = 36.7 bits (81), Expect = 0.038
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +1

Query: 253 SGKVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 414
           +G  P+I++V++           PKQPVIV               VGGACVL A
Sbjct: 95  TGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148


>AJ400879-2|CAC35388.1|  106|Homo sapiens ribosomal protein L27a
           protein.
          Length = 106

 Score =  115 bits (276), Expect = 9e-26
 Identities = 49/89 (55%), Positives = 60/89 (67%)
 Frame = +2

Query: 2   LRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFC 181
           LRGHVS                 NAGG HHHRIN DKYHPGYFGK+GM+++H ++N++FC
Sbjct: 11  LRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFC 70

Query: 182 PVLNLDKLWTLVSEQTRLKYASAPVARSP 268
           P +NLDKLWTLVSEQTR+  A      +P
Sbjct: 71  PTVNLDKLWTLVSEQTRVNAAKNKTGAAP 99


>AB020236-1|BAA77361.1|  148|Homo sapiens ribosomal protein L27A
           protein.
          Length = 148

 Score =  115 bits (276), Expect = 9e-26
 Identities = 49/89 (55%), Positives = 60/89 (67%)
 Frame = +2

Query: 2   LRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFC 181
           LRGHVS                 NAGG HHHRIN DKYHPGYFGK+GM+++H ++N++FC
Sbjct: 11  LRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFC 70

Query: 182 PVLNLDKLWTLVSEQTRLKYASAPVARSP 268
           P +NLDKLWTLVSEQTR+  A      +P
Sbjct: 71  PTVNLDKLWTLVSEQTRVNAAKNKTGAAP 99



 Score = 36.7 bits (81), Expect = 0.038
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +1

Query: 253 SGKVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 414
           +G  P+I++V++           PKQPVIV               VGGACVL A
Sbjct: 95  TGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148


>BC066326-1|AAH66326.1|  148|Homo sapiens ribosomal protein L27a
           protein.
          Length = 148

 Score =  112 bits (269), Expect = 6e-25
 Identities = 48/89 (53%), Positives = 60/89 (67%)
 Frame = +2

Query: 2   LRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFC 181
           LRGHVS                 NAGG HHHRIN DKYHPGYFGK+GM++++ ++N++FC
Sbjct: 11  LRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYNLKRNQSFC 70

Query: 182 PVLNLDKLWTLVSEQTRLKYASAPVARSP 268
           P +NLDKLWTLVSEQTR+  A      +P
Sbjct: 71  PTVNLDKLWTLVSEQTRVNAAKNKTGAAP 99



 Score = 33.5 bits (73), Expect = 0.35
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = +1

Query: 253 SGKVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 414
           +G  P+I++V++            KQPVIV               VGGACVL A
Sbjct: 95  TGAAPIIDVVRSGYYKVLGKGKLAKQPVIVKAKLFSRRAEEKIKSVGGACVLVA 148


>AB007178-1|BAA25837.1|   34|Homo sapiens ribosomal protein L27a
           protein.
          Length = 34

 Score = 36.7 bits (81), Expect = 0.038
 Identities = 16/27 (59%), Positives = 19/27 (70%)
 Frame = +2

Query: 188 LNLDKLWTLVSEQTRLKYASAPVARSP 268
           +NLDKLWTLVSEQTR+  A      +P
Sbjct: 1   VNLDKLWTLVSEQTRVNAAKNKTGAAP 27


>AK126225-1|BAC86496.1|  139|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44237 fis, clone THYMU3007845. ).
          Length = 139

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 12/43 (27%), Positives = 15/43 (34%)
 Frame = +3

Query: 285 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGCGWCLCTIC 413
           +W L      Q PQ        + L   R   + C WC C  C
Sbjct: 71  AWFLSPVHHSQIPQLAACPLQSLRLSKPRSPGRCCAWCGCLNC 113


>AY358091-1|AAQ88458.1|  126|Homo sapiens VFLL3057 protein.
          Length = 126

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 141 PSLPKYPGWYLSMLIL*WCSPPALPRPPGCLRCFPIRPCP 22
           P+LPK+PG  ++ L   W S    P P G +    + PCP
Sbjct: 55  PALPKWPGHLMAELQGPWLSLAHCPSPSGPI----VLPCP 90


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,464,770
Number of Sequences: 237096
Number of extensions: 1206689
Number of successful extensions: 2844
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2843
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3815180866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)