Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00427
         (456 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.1  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   8.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.4  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 267 RHQYCQSWILQVARQRQTPQTTCHSKS 347
           RH   ++W+    R + TPQ+   S++
Sbjct: 241 RHLERKAWVASFGRPKMTPQSLLPSQT 267


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 240 YFSLVCSETNVQSLSKFK 187
           YFS+VC      SL  FK
Sbjct: 11  YFSIVCQAKAHYSLRDFK 28


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 242 ASAPVARSPSSILSKLDTTS 301
           +S+P   SPSS  S +  TS
Sbjct: 88  SSSPSPSSPSSFFSSVSPTS 107


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 206  WTLVSEQTRLKYASAPVARSPSSILS-KLDT 295
            WTLVS   +++         PSS+   K++T
Sbjct: 1544 WTLVSNSVKMQRRFVVTNLQPSSVYQLKVET 1574


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 206  WTLVSEQTRLKYASAPVARSPSSILS-KLDT 295
            WTLVS   +++         PSS+   K++T
Sbjct: 1540 WTLVSNSVKMQRRFVVTNLQPSSVYQLKVET 1570


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,031
Number of Sequences: 438
Number of extensions: 2335
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)