Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00427
         (456 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC) id...    99   7e-22
At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB) si...    99   7e-22
At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA) si...    44   5e-05
At2g16100.1 68415.m01846 hypothetical protein                          29   2.0  
At5g01730.1 68418.m00091 expressed protein                             27   7.9  
At1g55890.1 68414.m06410 pentatricopeptide (PPR) repeat-containi...    27   7.9  

>At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC)
           identical to 60S ribosomal protein L27A GB:P49637
           [Arabidopsis thaliana]
          Length = 146

 Score =   99 bits (238), Expect = 7e-22
 Identities = 44/78 (56%), Positives = 50/78 (64%)
 Frame = +2

Query: 5   RGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCP 184
           RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR FH  +NK FCP
Sbjct: 12  RGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFFCP 71

Query: 185 VLNLDKLWTLVSEQTRLK 238
           ++NLDKLW+LV E  + K
Sbjct: 72  IVNLDKLWSLVPEDVKAK 89


>At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB)
           similar to 60S RIBOSOMAL PROTEIN L27A GB:P49637
           GI:1710530 from [Arabidopsis thaliana]
          Length = 146

 Score =   99 bits (238), Expect = 7e-22
 Identities = 44/78 (56%), Positives = 50/78 (64%)
 Frame = +2

Query: 5   RGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCP 184
           RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR FH  +NK FCP
Sbjct: 12  RGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFFCP 71

Query: 185 VLNLDKLWTLVSEQTRLK 238
           ++NLDKLW+LV E  + K
Sbjct: 72  IVNLDKLWSLVPEDVKAK 89


>At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA)
           similar to GB:BAA96068 from [Panax ginseng]
          Length = 104

 Score = 44.0 bits (99), Expect = 5e-05
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = +2

Query: 89  HHRINMDKYHPGYFGK--LGMRNFHFRKNKNFCPVLNLDKLWTLV 217
           H R    +  PG  G   +GMR FH  +NK +C ++NLDKLW++V
Sbjct: 19  HGRFGKHRKLPGSRGNAGVGMRYFHKLRNKFYCQIVNLDKLWSMV 63


>At2g16100.1 68415.m01846 hypothetical protein 
          Length = 250

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 85  APSQNQHGQVPSWILWQTW 141
           +P  +Q  Q+P WILW+ W
Sbjct: 20  SPRTSQFHQLPLWILWRIW 38


>At5g01730.1 68418.m00091 expressed protein
          Length = 1192

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -1

Query: 294 VSSFDNIDDGDLATGADAYFSLVCSETNVQSLSKFKTGQ 178
           +S+FDN +D  L+  A  Y +    ETN Q  S     Q
Sbjct: 642 ISTFDNFEDLSLSADAQDYAAPKEDETNSQDGSSMNPAQ 680


>At1g55890.1 68414.m06410 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 398

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 173 NFCPVLNLDKLWTLVSEQTRLKYASAPVARSPSSILS 283
           N CP+       T+VSE T +  A +P  +S +S+++
Sbjct: 13  NTCPIRRFSSAATVVSEPTAVTAAISPPQKSLTSLVN 49


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,586,585
Number of Sequences: 28952
Number of extensions: 169667
Number of successful extensions: 426
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)