Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00426
         (762 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D56636 Cluster: PREDICTED: similar to atrophin-1...    42   0.013
UniRef50_Q4V5M3 Cluster: IP06981p; n=1; Drosophila melanogaster|...    36   1.1  
UniRef50_UPI00015B5140 Cluster: PREDICTED: similar to transcript...    34   3.3  
UniRef50_UPI0000DB7A73 Cluster: PREDICTED: similar to atrophin-1...    34   3.3  

>UniRef50_UPI0000D56636 Cluster: PREDICTED: similar to atrophin-1 like
            protein; n=1; Tribolium castaneum|Rep: PREDICTED: similar
            to atrophin-1 like protein - Tribolium castaneum
          Length = 1647

 Score = 42.3 bits (95), Expect = 0.013
 Identities = 26/56 (46%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = +1

Query: 196  RAHSCTLSHALAFTSGTTSGAAQQEALGLGPYRPLP----HPDLLGRPYAEQLAHR 351
            RA+ C       + S   SGA      GL P R  P    HPDLLGRPYA+QLAH+
Sbjct: 1542 RAYFCNF----VWESNVASGAPGYPRPGLIPGRDAPLGLHHPDLLGRPYADQLAHQ 1593



 Score = 34.3 bits (75), Expect = 3.3
 Identities = 14/15 (93%), Positives = 15/15 (100%)
 Frame = +2

Query: 137  DPMVRLQMAGINPEY 181
            DPMVRLQMAGI+PEY
Sbjct: 1488 DPMVRLQMAGISPEY 1502


>UniRef50_Q4V5M3 Cluster: IP06981p; n=1; Drosophila
           melanogaster|Rep: IP06981p - Drosophila melanogaster
           (Fruit fly)
          Length = 203

 Score = 35.9 bits (79), Expect = 1.1
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +3

Query: 9   SASASLRRVPVPQDPVAVHTTAITRTPSPRLNSKQPNVSL*PLTRWCDCRWP 164
           S S  +  VPVP+D  A H+ A  R   P L++  P + + P+  +C  R P
Sbjct: 14  SESTPVAVVPVPRDSPAGHSLAALRISWPTLHTGCPEIGITPMALYCRIREP 65


>UniRef50_UPI00015B5140 Cluster: PREDICTED: similar to transcriptional
            corepressor Atro; n=1; Nasonia vitripennis|Rep:
            PREDICTED: similar to transcriptional corepressor Atro -
            Nasonia vitripennis
          Length = 1742

 Score = 34.3 bits (75), Expect = 3.3
 Identities = 14/15 (93%), Positives = 15/15 (100%)
 Frame = +2

Query: 137  DPMVRLQMAGINPEY 181
            DPMVRLQMAGI+PEY
Sbjct: 1601 DPMVRLQMAGISPEY 1615


>UniRef50_UPI0000DB7A73 Cluster: PREDICTED: similar to atrophin-1 like
            protein; n=1; Apis mellifera|Rep: PREDICTED: similar to
            atrophin-1 like protein - Apis mellifera
          Length = 1433

 Score = 34.3 bits (75), Expect = 3.3
 Identities = 14/15 (93%), Positives = 15/15 (100%)
 Frame = +2

Query: 137  DPMVRLQMAGINPEY 181
            DPMVRLQMAGI+PEY
Sbjct: 1306 DPMVRLQMAGISPEY 1320


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 555,806,264
Number of Sequences: 1657284
Number of extensions: 9075749
Number of successful extensions: 28307
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28285
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63381147830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)