Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00426
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0579 - 4293528-4294117,4294561-4294762,4296145-4296348,429...    29   5.3  
02_05_0167 - 26415319-26415494,26415591-26415840,26415909-264159...    28   7.1  

>02_01_0579 -
           4293528-4294117,4294561-4294762,4296145-4296348,
           4296425-4296585,4296665-4297158,4297526-4297584,
           4297766-4297841,4298511-4298552,4298757-4298860,
           4299071-4299280
          Length = 713

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +1

Query: 142 DGAIADGRDKSRVSRAHARAHSCTLSHAL-AFTSGTTSGAAQQEALGLGPYRPLPHPDL 315
           +G  AD   +    ++H    S  +   L  F+ G  S + Q++A G   Y P P P+L
Sbjct: 609 NGQFADDFTEDIRMKSHQMLESEDMQQLLRVFSMGGASTSLQEDAFGFPTYMPSPLPNL 667


>02_05_0167 -
           26415319-26415494,26415591-26415840,26415909-26415974,
           26416457-26416600,26416813-26416868,26416966-26417101,
           26417190-26417277,26417379-26417482,26418515-26419180,
           26419337-26419432,26419974-26420242,26420334-26420489,
           26421153-26421192
          Length = 748

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 420 HHEDFLRQSASASSRYALWRRRRGPLAL-RPVCPLQKLTMSDV*C 551
           HHE   R  ++A     + R+ RGP A   P  P + ++M DV C
Sbjct: 676 HHEASKRTHSAAFGTGGMNRQGRGPFAASHPKGPQRTISMKDVIC 720


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,555,151
Number of Sequences: 37544
Number of extensions: 267303
Number of successful extensions: 837
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)