Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00426
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33644| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_42678| Best HMM Match : Helicase_C (HMM E-Value=1.4e-24)            28   9.5  

>SB_33644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 678

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 39  VPQDPVAVHTTAITRTPSPRLNSKQPNV 122
           VP DP+    T + + PSP  NS  P V
Sbjct: 457 VPMDPITATNTIVPKAPSPSSNSVAPLV 484


>SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +1

Query: 181 SRAHARAHSCTLSHALAFTSGTTSGAAQQEALGLGPYRPLPHP 309
           +R  A+A     +    F +G         ALG  PYRP PHP
Sbjct: 14  NRLQAQAKGTPSNRCYIFCNGLMDHLCLCNALG-SPYRPYPHP 55


>SB_42678| Best HMM Match : Helicase_C (HMM E-Value=1.4e-24)
          Length = 1058

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/29 (55%), Positives = 17/29 (58%)
 Frame = -3

Query: 529 SFCRGHTGLRARGPRRLLQSAYLELALAL 443
           S  RG  GLR +GPRR L   Y E AL L
Sbjct: 24  SLSRG-LGLRRKGPRRSLHDPYEEDALVL 51


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,454,232
Number of Sequences: 59808
Number of extensions: 279849
Number of successful extensions: 2604
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2603
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)