Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00425
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    27   2.8  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    26   4.8  
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    26   6.4  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    26   6.4  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    26   6.4  
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    25   8.5  

>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 213 TNNCAYLLESVLSCVALLTSHMIADQVGKDVVEDLARSL 97
           TN C+   ++   CV L   H+IA + G+D + DL R L
Sbjct: 135 TNPCSPDEKNQNDCVDLKV-HLIAKEDGRDAIIDLTRGL 172


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 190 QQIGTVVGGVVDYAKKKSY-EDFCAKH-KIRRPTMTSSELARK 312
           + +G+  GG V   K+ S  + F  K  + RRPT T  E ARK
Sbjct: 306 RMLGSGAGGSVRIMKRSSDGKIFAVKEFRARRPTETEREYARK 348


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 663 SRSTHATGPAFANAVAPSRTCL 728
           S ST    P F N  AP+ TCL
Sbjct: 45  SNSTTVPPPPFVNTTAPNGTCL 66


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -2

Query: 661 PNLSQQLNLFWVLIQLSNAFVD*ESNEAPDGSRSKNSVDVSGLFRFF 521
           P+ S+    F  L  LSN     +S+    G +  NSV   GLF FF
Sbjct: 292 PSASETFRYF--LPMLSNGRDAKKSSSKSHGGKQNNSVAKDGLFDFF 336


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 264 AQDSTTDDDLLRVSEEMFNADI 329
           AQD   DDD+  + EE+F+ D+
Sbjct: 33  AQDDEPDDDIDALIEELFSEDV 54


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = +2

Query: 527 TEQTTYINTIL---ATGPIRSLITFLVNKGITQLNEY 628
           TE+   +  +L   A GP+ S++TF  NK +++L EY
Sbjct: 377 TEKPVIVGLLLFSDALGPLSSILTFASNK-VSRLCEY 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,928,780
Number of Sequences: 5004
Number of extensions: 57883
Number of successful extensions: 191
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)