Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00425
(734 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31891| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_23459| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0.17) 30 1.7
SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0) 30 2.2
SB_45623| Best HMM Match : BTB (HMM E-Value=1.4e-36) 29 3.9
SB_23363| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_10860| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_6822| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_51669| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88) 28 9.0
>SB_31891| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 282
Score = 43.2 bits (97), Expect = 2e-04
Identities = 28/101 (27%), Positives = 44/101 (43%)
Frame = +2
Query: 428 ECMERTNNKTFCCTIRQLSQECDQTRVVTPNEETEQTTYINTILATGPIRSLITFLVNKG 607
E + + F + + E + VV E E +I+ I TGP+ FL KG
Sbjct: 52 EALRKPTYDAFVKLLDNYASETGKPEVVNQEEINENRVFIDRIYDTGPMEIAHKFLAGKG 111
Query: 608 ITQLNEYPEQVELLRKIWFTKYARHWTGLCKCSCAFENVFM 730
+ ++ P + L ++WF Y R K S FE+VF+
Sbjct: 112 LVP-SDRPGFKKKLYQMWFELYQRTRGCRVKDSSGFEHVFV 151
>SB_23459| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0.17)
Length = 797
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +3
Query: 270 DSTTDDDLLRVSEEMFNADINNAFNYIQVNLQGKTTPMSRNDEAQSNLLNVPENVWSGPT 449
+S DD+L R + + F Y+QVNL R D + +N+P S
Sbjct: 580 ESLRDDNLARSTAAAYQN--GTTFFYVQVNLHKTFVISKRTDSIINESVNLPRRSMSVDR 637
Query: 450 IR-PFVALFD 476
+R PF FD
Sbjct: 638 LRGPFRCKFD 647
>SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)
Length = 2007
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +2
Query: 470 IRQLSQECDQTRVVTPNEETEQTT 541
I+ L +EC QT VV PN T QTT
Sbjct: 794 IKALKEECIQTVVVNPNIATVQTT 817
>SB_45623| Best HMM Match : BTB (HMM E-Value=1.4e-36)
Length = 574
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 455 TFCCTIRQLSQECDQTRVVTPNEETEQTTYINTILATGPIRSLIT 589
T CC I ++ C+ + TP ++ N++LA G ++ + T
Sbjct: 295 TVCCYIPSANKWCELASMNTPRWRSQMVLLNNSVLAIGGLKEVST 339
>SB_23363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 28.3 bits (60), Expect = 6.8
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -2
Query: 115 RSGPQPGLSHQRDIPPEKQRK 53
R+GP+P H+R+ PP +Q++
Sbjct: 170 RAGPEPRKQHRREDPPRRQQE 190
>SB_10860| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1292
Score = 28.3 bits (60), Expect = 6.8
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -2
Query: 115 RSGPQPGLSHQRDIPPEKQRK 53
R+GP+P H+R+ PP +Q++
Sbjct: 1172 RAGPEPRKQHRREDPPRRQQE 1192
>SB_6822| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 223 DYAKKKSYEDFCAKHKIRRPTMTSSELARKC 315
DY ++S E+ +KH+ R ++ SS L +C
Sbjct: 802 DYKSEQSSENCASKHEAARSSLESSSLGLRC 832
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 27.9 bits (59), Expect = 9.0
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 67 LGVCHADDLAQAAGQIFNNILPNLISNHVTGQQGNTAQNTFQQIG-TVVGGVVDYAKKKS 243
LGV D+L G+ N+ +L H Q G T+ + + +G + G VV+Y+ +S
Sbjct: 129 LGVLTYDELDNGQGRARLNLFRHL---HEI-QSGRTSSISHEILGFSCTGEVVNYSDGRS 184
Query: 244 YEDFC 258
ED C
Sbjct: 185 AEDVC 189
>SB_51669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 646
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -3
Query: 246 VALLLRIVNDTTNNCAYLLESVLSCVALLTSHMIADQVGKDVVEDLARSLG*VI 85
+A L V + NN AY+ V + + + + VGK+ + D+A LG V+
Sbjct: 407 LANLASYVENVINNMAYMNTEVYADINMRVTSCARAFVGKECMSDVAFDLGVVV 460
>SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
Length = 953
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +2
Query: 473 RQLSQECDQTRVVTPNEETEQTTYINTILAT 565
R+LS++C R PNE E+T ++TIL+T
Sbjct: 289 RKLSRDCGGRR---PNEPYERTARVHTILST 316
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,944,944
Number of Sequences: 59808
Number of extensions: 434877
Number of successful extensions: 1172
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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