Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00425
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ131742-1|CAA10498.1|  590|Caenorhabditis elegans protein ( Cae...    28   6.0  
AF098989-4|AAK18956.2|  590|Caenorhabditis elegans Dystrobrevin ...    28   6.0  

>AJ131742-1|CAA10498.1|  590|Caenorhabditis elegans protein (
           Caenorhabditis elegansmRNA for dystrobrevin. ).
          Length = 590

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 502 QSCYAE*RNGTNHLHQH-YSCYGTHQEPHYFLSQQRHYSAE*VPRTS 639
           QSC+   R   NH ++H    Y +++ P   L    H S + +P TS
Sbjct: 289 QSCFWRGRTSQNHSNEHEMKEYSSYKSPTKQLVHSIHKSLQCIPATS 335


>AF098989-4|AAK18956.2|  590|Caenorhabditis elegans Dystrobrevin
           homolog protein 1 protein.
          Length = 590

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 502 QSCYAE*RNGTNHLHQH-YSCYGTHQEPHYFLSQQRHYSAE*VPRTS 639
           QSC+   R   NH ++H    Y +++ P   L    H S + +P TS
Sbjct: 289 QSCFWRGRTSQNHSNEHEMKEYSSYKSPTKQLVHSIHKSLQCIPATS 335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,293,054
Number of Sequences: 27780
Number of extensions: 329514
Number of successful extensions: 917
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)