Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00425
         (734 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1 p...    32   0.45 
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p...    32   0.45 
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains...    29   2.4  
At5g61480.1 68418.m07714 leucine-rich repeat transmembrane prote...    29   3.2  
At5g20760.1 68418.m02467 hypothetical protein                          28   5.6  
At3g18524.1 68416.m02355 DNA mismatch repair protein MSH2 (MSH2)...    28   7.4  
At1g62950.1 68414.m07108 leucine-rich repeat transmembrane prote...    28   7.4  
At3g58740.1 68416.m06547 citrate synthase, glyoxysomal, putative...    27   9.8  
At1g68400.1 68414.m07814 leucine-rich repeat transmembrane prote...    27   9.8  

>At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1
           protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
           domain; contains Pfam PF00400: WD domain, G-beta repeat
           (8 copies); identical to stomatal cytokinesis defective
           [Arabidopsis thaliana] GI:19743728; supporting cDNA
           gi|19743727|gb|AY082605.1|; PMID 12874123
          Length = 909

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +3

Query: 270 DSTTDDDLLRVSEEMFNADINNAFNYIQVNL 362
           D +T  D L VS EMF  D NN  +Y+Q +L
Sbjct: 633 DLSTVRDALEVSAEMFKKDANNVSDYVQRHL 663


>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
           protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
           domain; contains Pfam PF00400: WD domain, G-beta repeat
           (8 copies); identical to stomatal cytokinesis defective
           [Arabidopsis thaliana] GI:19743728; supporting cDNA
           gi|19743727|gb|AY082605.1|; PMID 12874123
          Length = 1187

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +3

Query: 270 DSTTDDDLLRVSEEMFNADINNAFNYIQVNL 362
           D +T  D L VS EMF  D NN  +Y+Q +L
Sbjct: 633 DLSTVRDALEVSAEMFKKDANNVSDYVQRHL 663


>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 505

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +3

Query: 342 NYIQVNLQGKTTPMSRNDEAQSNLLNVPENVWSGPTIRPFVALFDNYHKNVIRPELLR 515
           N I+  ++GK    S+     S LLN  + +WS       + +F   HK+ + P LLR
Sbjct: 321 NRIEQPVEGKNRGESQGPLTLSGLLNFIDGLWSSCGDERII-IFTTNHKDRLDPALLR 377


>At5g61480.1 68418.m07714 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 1041

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +3

Query: 330 NNAFNYIQVNLQGKTTPMSRNDEAQSNLLN--VPENVWSGPTIRPFVALFDN 479
           NN F   Q+     T P+ +     +N  +  +PEN+W  P ++ F A F N
Sbjct: 450 NNRFTD-QIPADFATAPVLQYLNLSTNFFHRKLPENIWKAPNLQIFSASFSN 500


>At5g20760.1 68418.m02467 hypothetical protein
          Length = 220

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
 Frame = +3

Query: 273 STTDDDLLRVS-EEMFNADINNAFNYIQVNLQGKTTPMSRNDEAQSNLLNV---PENVWS 440
           S   DD+ ++  +++ + D N+    I+ N +G+   +SR     +NL+ +   P N++ 
Sbjct: 4   SDLPDDIFQIIVKKLGDEDFNHLGPIIRSNKRGRDIGLSREILKSANLMGMCLHPPNIFP 63

Query: 441 GPTIRP-FVALFDNYHKNVIRPELLRRMKKRNKPLTSTLFLL 563
           G   R  FV   +  +   +  E + R+  R + +  +LFLL
Sbjct: 64  GQLFRNFFVRCLEFENATAMYYEAI-RLIVREENVMGSLFLL 104


>At3g18524.1 68416.m02355 DNA mismatch repair protein MSH2 (MSH2)
           identical to SP|O24617 DNA mismatch repair protein MSH2
           (AtMsh2) {Arabidopsis thaliana}
          Length = 937

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = -3

Query: 279 SSNLVLGAKIFVALLLRIVNDTTNNCAYLLESVLSCVALLTSHMIADQVGKDVVEDLAR 103
           SS + LGAK     +    +  +N C  L +S+  C  ++T     +  G+D+  DL R
Sbjct: 186 SSLIALGAK---ECIFPAESGKSNECKSLYDSLERCAVMITERKKHEFKGRDLDSDLKR 241


>At1g62950.1 68414.m07108 leucine-rich repeat transmembrane protein
           kinase, putative contains protein kinase domains
          Length = 890

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 261 QAQDSTTDDDLLRVSEEMFNADINNAFNYIQVNLQG 368
           Q +D+  DD    ++  + NAD+ N+FN +  N +G
Sbjct: 38  QFKDNINDDPYNSLASWVSNADLCNSFNGVSCNQEG 73


>At3g58740.1 68416.m06547 citrate synthase, glyoxysomal, putative
           strong similarity to SP|P49299 Citrate synthase,
           glyoxysomal precursor {Cucurbita maxima}; contains Pfam
           profile PF00285: Citrate synthase
          Length = 480

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 494 DQTRVVTPNEETEQTTYINTILATGPIRSLITFL-VNKGITQLNEYPEQVELLRKIWFTK 670
           D  ++ T  ++     Y    L T P+RS I+++  ++GI +   YP + EL  K  +T+
Sbjct: 76  DLKKITTGKDDKGLNLYDPGYLNTAPVRSSISYIDGDEGILRYRGYPVE-ELAEKSTYTE 134


>At1g68400.1 68414.m07814 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor kinase GB:AAA33715
           from [Petunia integrifolia]
          Length = 670

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 360 LQGKTTPMSRNDEAQSNLLNVPENVWSGPT 449
           L    T   R DEA+++ LN PE V S PT
Sbjct: 229 LSSDPTKPGRPDEAKASPLNKPETVPSSPT 258


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,135,053
Number of Sequences: 28952
Number of extensions: 300866
Number of successful extensions: 812
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)