Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00424
         (789 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                159   2e-39
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           37   0.021
SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24)       33   0.20 
SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24)                31   1.4  
SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068)             30   1.9  
SB_27523| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-09)                 30   2.5  
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088)                 29   4.3  
SB_49736| Best HMM Match : Fibrinogen_C (HMM E-Value=2.3e-10)          29   5.7  
SB_42582| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_34720| Best HMM Match : Fibrinogen_C (HMM E-Value=7.8e-13)          29   5.7  
SB_34860| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_11954| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_47455| Best HMM Match : NACHT (HMM E-Value=4.3e-05)                 28   9.9  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  159 bits (387), Expect = 2e-39
 Identities = 72/84 (85%), Positives = 80/84 (95%)
 Frame = +1

Query: 1   DVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFN 180
           DVYKIGGIGTVPVGRVETGVLKPGT+V F+P+NITTEVKSVEMHHE+L EA+PGDNVGFN
Sbjct: 111 DVYKIGGIGTVPVGRVETGVLKPGTVVTFSPSNITTEVKSVEMHHESLAEALPGDNVGFN 170

Query: 181 VKNVSVKELRRGYVAGDSKNNPPK 252
           VKNVSVK+++RG VAGD KNNPPK
Sbjct: 171 VKNVSVKDIKRGNVAGDFKNNPPK 194



 Score =  139 bits (337), Expect = 2e-33
 Identities = 59/82 (71%), Positives = 72/82 (87%)
 Frame = +3

Query: 264 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDA 443
           FTAQVIV+NHPG+I  GY+PVLDCHTAHIACKF ++ EK+DRR+GK  E NPK IK+GDA
Sbjct: 199 FTAQVIVMNHPGEIHAGYSPVLDCHTAHIACKFDKLLEKIDRRSGKKLEDNPKMIKTGDA 258

Query: 444 AIVNLVPSKPLCVESFQEFPPL 509
           A+V ++PSKP+CVE+F EFPPL
Sbjct: 259 AMVEMIPSKPMCVETFTEFPPL 280



 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 19/24 (79%), Positives = 22/24 (91%)
 Frame = +2

Query: 500 PTPGRFAVRDMRQTVAVGVIKAVN 571
           P  GRFAVRDM+QTVAVGVIK+V+
Sbjct: 278 PPLGRFAVRDMKQTVAVGVIKSVD 301


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 36.7 bits (81), Expect = 0.021
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 381 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEF 500
           +D++TGK  +  P+ IK    AI  L     +C+E F +F
Sbjct: 496 IDKKTGKKGQTRPRFIKQDQIAIARLETQGVICIEKFSDF 535


>SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24)
          Length = 1064

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 21/77 (27%), Positives = 33/77 (42%)
 Frame = -1

Query: 234 GVTSNITTTQFLDGHVLYVETYIVSRYSFLESFVVHLHRFDFSSDVGGGKDNNGTWFQHT 55
           G T   TTT      V    T ++SRYS++E  + H + +   S        + TW Q  
Sbjct: 86  GQTDRRTTTHTATSVVENPYTSLISRYSYIEKLMTHHYTYRHISGGDPLHIPDLTWEQLK 145

Query: 54  SFNSADGHGTNTTDFVY 4
            F++   H +N   + Y
Sbjct: 146 KFHATHYHPSNARFYTY 162


>SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 695

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/43 (37%), Positives = 28/43 (65%)
 Frame = +3

Query: 345 HIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 473
           HIA K  E+K   D ++ K+ ++ PK++ SGD    ++VP++P
Sbjct: 74  HIAKKL-EVK---DSQSSKNNDLYPKTVPSGDIGTDSVVPNQP 112


>SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24)
          Length = 726

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 366 EIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPP 506
           EI     R TG++TE+N  ++ SG+  I  +V +   C+   Q + P
Sbjct: 257 EINASHSRETGQTTEIN--ALHSGEPGIPGVVAAYQACIRQVQLYGP 301


>SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068)
          Length = 173

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +1

Query: 7   YKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGD 165
           + I G GT+  G + +G +     V      +T +VKS++M  + + +A  GD
Sbjct: 120 FSIRGQGTIMTGTILSGSVCVNDTVEIPSLKVTKKVKSMQMFKKPVDKASQGD 172


>SB_27523| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-09)
          Length = 666

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = -2

Query: 533 SCHGQQNDQGWEFLEGLYT*RLGRYQVDNGCISRLDGFWVDFSRFTSTTVN 381
           S  GQQND+  E    L   +    Q+D  CI RL   ++   R  ST +N
Sbjct: 476 SRRGQQNDEFAELSHQLPLPKSISSQLDRLCIMRLTNSYIKIKRLLSTMMN 526


>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3367

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -3

Query: 433  DLMDF--GLTSVDLPVRRSTFSL-ISANLQAMWAVWQS 329
            DL +F  G+T++ LP   ST  +    NLQ  W +WQS
Sbjct: 2456 DLGNFIKGITTIPLPSSSSTPIIDFEVNLQGEWILWQS 2493


>SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088)
          Length = 665

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = -2

Query: 215 PRRNSLTDTFFTLKPTLSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFNT-PVSTLP 39
           P      +T    + TLSPGT +   +        S   +A  +TT+ P   T PV+TLP
Sbjct: 17  PETTVSPETTAVPETTLSPGTTAAPETTVAPETTVSPETIAEPETTVAPETTTAPVTTLP 76

Query: 38  TGTVPIP 18
             +   P
Sbjct: 77  PDSTMAP 83


>SB_49736| Best HMM Match : Fibrinogen_C (HMM E-Value=2.3e-10)
          Length = 98

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 431 LDGFWVDFSRFTSTTVNFFFDFCKFAGNVGSVAIQHW 321
           L G W  F R    +V+F+ D+ ++    G +  +HW
Sbjct: 8   LGGGWTVFQRRQDGSVDFWRDWAEYKNGFGDLQGEHW 44


>SB_42582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 939

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 431 LDGFWVDFSRFTSTTVNFFFDFCKFAGNVGSVAIQHW 321
           L G W  F R    +V+F+ D+ ++    G +  +HW
Sbjct: 250 LGGGWTVFQRRQDGSVDFWRDWAEYKNGFGDLQGEHW 286


>SB_34720| Best HMM Match : Fibrinogen_C (HMM E-Value=7.8e-13)
          Length = 168

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 431 LDGFWVDFSRFTSTTVNFFFDFCKFAGNVGSVAIQHW 321
           L G W  F R    +V+F+ D+ ++    G +  +HW
Sbjct: 8   LGGGWTVFQRRQDGSVDFWRDWAEYKNGFGDLQGEHW 44


>SB_34860| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 94  ANITTEVKSVEMHHEALQ-EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPP 249
           A+ TT          A+Q E  PG ++G   + + VKEL++   AG +   PP
Sbjct: 49  ASATTSTTGSHQAMSAMQSEEEPGASMGHRTERLKVKELKQMKRAGLTPLRPP 101


>SB_11954| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 79  VVFAPANITTEVKSVEMHHE-ALQEAVPGDNVGFNVKNVSVKELRRGYV 222
           VVF P NI+ +   ++     A ++ +P     + +KN    + R GYV
Sbjct: 14  VVFDPENISVDEGMIKFKGRLAFRQYMPAKPTKYGIKNWMAADARNGYV 62


>SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 656

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +3

Query: 306 SNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLV-PSKP 473
           +N   P+L+  T  +A        K D  T  + +VN KS   G  +I+    P+ P
Sbjct: 586 ANALNPLLEHRTEKVALSKPMSNGKEDLNTETTADVNKKSCADGSDSIIGTTDPNSP 642


>SB_47455| Best HMM Match : NACHT (HMM E-Value=4.3e-05)
          Length = 899

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 20/74 (27%), Positives = 33/74 (44%)
 Frame = +3

Query: 189 RVRQGIASWLCCW*LQKQPT*GAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAE 368
           R+     S LC W   +QP  G+   T + +  N   +  + +    +  T  ++C    
Sbjct: 397 RMSSNAVSGLCYWLSYRQPVSGSVPLTGKELNDNPGIRELHLFNVTSEACTTILSC---- 452

Query: 369 IKEKVDRRTGKSTE 410
           +KE V  RT +STE
Sbjct: 453 VKESVSLRTLRSTE 466


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,382,377
Number of Sequences: 59808
Number of extensions: 552301
Number of successful extensions: 1835
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1832
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)