Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00423
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    46   6e-06
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    31   0.14 
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    26   6.9  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   9.1  

>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 46.0 bits (104), Expect = 6e-06
 Identities = 19/42 (45%), Positives = 27/42 (64%)
 Frame = +1

Query: 259 MLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVILE 384
           M TGR +VR + C  C T +GW Y  + E +Q++K+G  ILE
Sbjct: 60  MSTGRFIVRHIHCCRCHTYIGWKYVSSYEPSQKFKDGHYILE 101


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +2

Query: 140 DVNLTNRSELIS---TRFTGATGRAFLFHKVVNLIYSEVQDL*C*QDVTWCVMF 292
           D +L + SE+ S   T +TG+     L   VVNL  S V +L C  D TW + F
Sbjct: 410 DTSLLSVSEVTSHPPTEWTGSPLAHVLCSDVVNLSVSTVFNLLCGSDTTWIINF 463


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 30  FNFQINLSVLTKLNFKKWVKYFLIILEERDYF 125
           FN  I  S +TK+NF +  KY + + + + +F
Sbjct: 163 FNSSILFSSITKINFSRGYKYRIQLTDGKIWF 194


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 151 YESFRINKYAIYWSYRSCILIPQGCESNLFGSSGSVML 264
           Y SFR  +  ++W +   +   +G    + GSSGS  L
Sbjct: 450 YNSFREER-VMFWIFPIAVQFMRGITVGVIGSSGSAQL 486


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,814,821
Number of Sequences: 5004
Number of extensions: 52250
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)