Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00423
         (770 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0058 - 19688221-19688448,19688899-19688949,19689061-19689153     59   4e-09
12_02_0358 - 17948460-17948687,17949442-17949534                       56   2e-08
10_06_0133 - 11081169-11081252,11082857-11082965,11083865-11084031     56   3e-08
07_03_1056 + 23619815-23619957,23621080-23621188,23622555-23622635     54   1e-07
03_05_0798 + 27798095-27798190,27798325-27798366,27799152-277991...    44   1e-04

>11_06_0058 - 19688221-19688448,19688899-19688949,19689061-19689153
          Length = 123

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 23/50 (46%), Positives = 35/50 (70%)
 Frame = +1

Query: 259 MLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVILERALVTESD 408
           ++TG H V D+ C++C   LGW YE A EE+Q+YKEG+ I E+A + + +
Sbjct: 73  LMTGLHTVADIYCRDCREVLGWKYERAFEESQKYKEGKFIFEKAKIVKEN 122


>12_02_0358 - 17948460-17948687,17949442-17949534
          Length = 106

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 22/50 (44%), Positives = 33/50 (66%)
 Frame = +1

Query: 259 MLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVILERALVTESD 408
           ++TG H V D+ C +C   LGW YE A EE Q+YKEG+ I E++ + + +
Sbjct: 56  LMTGLHTVADIYCNDCREVLGWKYERAYEETQKYKEGKFIFEKSKIVKEN 105



 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +2

Query: 110 GTRLFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNLIYSEVQD 253
           G R++SC +C  ++    ++IS  F G  GRAFLF   +N++    +D
Sbjct: 6   GPRVYSCCNCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNVVVGAKED 53


>10_06_0133 - 11081169-11081252,11082857-11082965,11083865-11084031
          Length = 119

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 23/44 (52%), Positives = 32/44 (72%)
 Frame = +1

Query: 259 MLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVILERA 390
           ++TG H V+D+ C  C   LGW YE A EE+++YKEG+ ILE+A
Sbjct: 69  LMTGLHTVKDIYCSCCQQILGWRYEKAYEESEKYKEGKFILEKA 112



 Score = 33.9 bits (74), Expect = 0.14
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 119 LFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNLIYSEVQD 253
           +  C  C V+  +   ++S  F G  GRA+LF  VVN+     +D
Sbjct: 22  VLKCRRCRVDAASADAILSRDFRGRFGRAYLFDHVVNISLGPNED 66


>07_03_1056 + 23619815-23619957,23621080-23621188,23622555-23622635
          Length = 110

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 22/47 (46%), Positives = 32/47 (68%)
 Frame = +1

Query: 256 VMLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVILERALV 396
           +++TG H V D+ C  C   LGW YE A  E+Q+YKEG+ ILE+ ++
Sbjct: 60  LLMTGLHTVNDIYCSCCQRLLGWRYEKAYSEDQKYKEGKYILEKHMM 106



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 20/58 (34%), Positives = 33/58 (56%)
 Frame = +2

Query: 80  MGKIFLDHIGGTRLFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNLIYSEVQD 253
           MG +F++ + G ++F C  C V+  +   ++S  F G  GRA+LF  VVN+     +D
Sbjct: 1   MGLLFVESLPGPKVFKCKFCGVDSASPDAIVSKEFRGRHGRAYLFDSVVNVSLGPRED 58


>03_05_0798 +
           27798095-27798190,27798325-27798366,27799152-27799190,
           27799238-27799420
          Length = 119

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 21/56 (37%), Positives = 36/56 (64%)
 Frame = +2

Query: 80  MGKIFLDHIGGTRLFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNLIYSEV 247
           MG++F+ H+ G +++SC  C  +L   S++IS  F    G+A+LF+K+  L Y+ V
Sbjct: 1   MGRLFVMHLEG-KVYSCKHCHTHLGLSSDIISKSFHCKHGKAYLFNKLKLLAYNTV 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,086,331
Number of Sequences: 37544
Number of extensions: 276901
Number of successful extensions: 622
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)