Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00423
         (770 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4535| Best HMM Match : F5_F8_type_C (HMM E-Value=3.92364e-44)       61   1e-09
SB_23989| Best HMM Match : Yippee (HMM E-Value=2.8e-09)                54   1e-07
SB_36184| Best HMM Match : UBA (HMM E-Value=2.4e-09)                   29   4.2  

>SB_4535| Best HMM Match : F5_F8_type_C (HMM E-Value=3.92364e-44)
          Length = 972

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 27/54 (50%), Positives = 37/54 (68%)
 Frame = +1

Query: 256  VMLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVILERALVTESDGIE 417
            V+LTG H V D+ C+ C T LGW YE A E +Q+YKEG+ I+E A + + +G E
Sbjct: 919  VLLTGLHAVSDIFCECCKTTLGWKYEHAFEISQKYKEGKYIIEMAHMIKDNGWE 972


>SB_23989| Best HMM Match : Yippee (HMM E-Value=2.8e-09)
          Length = 93

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 23/46 (50%), Positives = 31/46 (67%)
 Frame = +1

Query: 259 MLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVILERALV 396
           +LTG H+V D+ C  C T +GW Y  A EE ++YK G+ ILERA +
Sbjct: 14  LLTGVHVVADLYCNKCATYVGWKYIDAYEEKEKYKVGKFILERAKI 59


>SB_36184| Best HMM Match : UBA (HMM E-Value=2.4e-09)
          Length = 1337

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 22/87 (25%), Positives = 38/87 (43%)
 Frame = -3

Query: 342  SSKFIYPTQLRTTVLTRNITHHVTSC*HHRS*TSE*IRFTTLWNKNARPVAPVNRVLINS 163
            + KF Y  +  T V        + +   +R+ +++  RF  +  +   P   V   L++ 
Sbjct: 1125 TKKFRYENRPDTPVPLAQRNSSMRTDQMYRAFSTKKSRFCAVVRREGFPEDDVMSELVHQ 1184

Query: 162  ERFVRLTSHDAHENSRVPPI*SRNILP 82
                +L SH AH  S V P+   N+LP
Sbjct: 1185 PSTFKLVSHPAHTISIVAPVVLINLLP 1211


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,554,876
Number of Sequences: 59808
Number of extensions: 352322
Number of successful extensions: 708
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)