Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00423
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35600-4|CAB54236.1|  137|Caenorhabditis elegans Hypothetical pr...    63   2e-10
AF038604-4|AAO38680.1|  134|Caenorhabditis elegans Hypothetical ...    60   2e-09
AF038604-3|AAB92012.1|  161|Caenorhabditis elegans Hypothetical ...    60   2e-09
AF038604-2|AAB92013.1|  468|Caenorhabditis elegans Hypothetical ...    55   6e-08

>Z35600-4|CAB54236.1|  137|Caenorhabditis elegans Hypothetical
           protein F37A8.5 protein.
          Length = 137

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 27/55 (49%), Positives = 38/55 (69%)
 Frame = +1

Query: 256 VMLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVILERALVTESDGIEE 420
           V+LTG H V D+ C+ C T LGW YE A E +Q+YKEG+ I+E A + + +G +E
Sbjct: 79  VLLTGLHAVADIYCEICKTTLGWKYEHAFESSQKYKEGKFIIELAHMVKDNGWDE 133



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
 Frame = +2

Query: 77  KMGKIFLDHI-GGTRLFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNL 232
           K  K F  ++  G R +SC  C  NL   +ELIS  F G+ G+A+LF+ VVN+
Sbjct: 18  KKQKTFQHYLPAGDRCYSCIHCRANLAAHAELISKSFQGSQGKAYLFNAVVNV 70


>AF038604-4|AAO38680.1|  134|Caenorhabditis elegans Hypothetical
           protein B0546.4b protein.
          Length = 134

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 26/44 (59%), Positives = 30/44 (68%)
 Frame = +1

Query: 259 MLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVILERA 390
           M TG H VRDV C  C  KLGW+YE A  E+Q YKE +VI+E A
Sbjct: 62  MTTGWHTVRDVFCVTCNQKLGWMYEMAVSESQTYKETQVIIENA 105



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 80  MGKIFLDHIGGT-RLFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNLIYSEVQ 250
           MG+ F    G    L+ C  C+  LT   EL S  FTG+TG A LF +  N++Y   +
Sbjct: 1   MGRQFAGICGARGSLYGCVVCNTYLTCSKELTSKAFTGSTGPATLFKRAWNVVYGRCE 58


>AF038604-3|AAB92012.1|  161|Caenorhabditis elegans Hypothetical
           protein B0546.4a protein.
          Length = 161

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 26/44 (59%), Positives = 30/44 (68%)
 Frame = +1

Query: 259 MLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVILERA 390
           M TG H VRDV C  C  KLGW+YE A  E+Q YKE +VI+E A
Sbjct: 62  MTTGWHTVRDVFCVTCNQKLGWMYEMAVSESQTYKETQVIIENA 105



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 80  MGKIFLDHIGGT-RLFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNLIYSEVQ 250
           MG+ F    G    L+ C  C+  LT   EL S  FTG+TG A LF +  N++Y   +
Sbjct: 1   MGRQFAGICGARGSLYGCVVCNTYLTCSKELTSKAFTGSTGPATLFKRAWNVVYGRCE 58


>AF038604-2|AAB92013.1|  468|Caenorhabditis elegans Hypothetical
           protein B0546.3 protein.
          Length = 468

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 24/48 (50%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
 Frame = +1

Query: 292 SCKNCGTKLGWVYEFATEENQRYKEGRVILERALVTESDGIEEI-QVN 432
           S K+C  +LGW+YE A  +N++YKEG VILER  +TE +   +I Q+N
Sbjct: 3   SVKSCRAQLGWMYELAPNDNEKYKEGSVILERMNITEREAFSKISQMN 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,076,256
Number of Sequences: 27780
Number of extensions: 278501
Number of successful extensions: 656
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)