Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00422X
         (474 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    28   0.63 
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    27   1.9  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    27   1.9  
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ...    25   5.9  
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    25   5.9  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   5.9  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   7.8  

>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 28.3 bits (60), Expect = 0.63
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 331 ILQHRRPRLPLMQLEAPCSFNFCSLRA 411
           I Q     LP + L +PCSF  CSLRA
Sbjct: 48  IAQKSNISLPFLTL-SPCSFTICSLRA 73


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 209 SIVSQLTAAAMVAPTP*GDAKHPPFSTSLQD 117
           SI  Q T A+ +AP P G +  PP   +  D
Sbjct: 276 SIAPQPTGASTIAPQPTGTSPSPPVEMNFPD 306


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = -2

Query: 329 WHWGSVDSISGPHARFQLSGNSGRKTAAAAQAYYGNLVAGSIVSQLTAAAMVAPTP*GDA 150
           +H G++ + S P     +S  +   T    +   G    GSI++Q + A  V P P   +
Sbjct: 627 FHQGALVTPSVPPVIATVSKTNTTNTGVQQRGNVGVTTTGSILTQSSPALPVQPVPLAYS 686

Query: 149 KHPPFSTS 126
           K  P + S
Sbjct: 687 KPAPTTKS 694


>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 304 MESTDPQCHILQHRRPRLPLMQLEAPCSF 390
           M+S   Q ++L   RP LPL     P  F
Sbjct: 88  MDSLSHQIYLLHKNRPTLPLKPTNQPTRF 116


>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 325 TGGLLTPLVAPMLGFSSAGIAAG 257
           TGGL  P VA  LG   AG+  G
Sbjct: 189 TGGLAAPFVAAGLGTLFAGLGLG 211


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 147 TSPVLDIAPGSDLFCFIWN*NA 82
           T P+  + P  ++FC IW+ NA
Sbjct: 411 THPLRSVIPLDNIFCNIWSDNA 432


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -2

Query: 398 QKLKEHGASSCISGKRGRRCCNIWHWGS 315
           Q   E  A +C  G  G  C  +W+W +
Sbjct: 394 QSSAEAAALACSGGSDGVTCGYMWYWNN 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,696,624
Number of Sequences: 5004
Number of extensions: 31289
Number of successful extensions: 65
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)