Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00422X
(474 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0362 + 7860088-7860197,7861606-7861636,7861738-7861801,786... 31 0.63
10_07_0080 - 12704866-12705224,12705389-12705512,12705905-127060... 29 1.4
09_04_0269 + 16265191-16265472,16265574-16266149 29 2.5
11_06_0111 - 20217128-20217198,20217648-20217770,20217924-202186... 28 4.4
09_02_0338 + 7426999-7428322,7428390-7428646 28 4.4
03_06_0356 + 33350365-33350707,33351683-33351799,33352663-33352790 28 4.4
03_05_0929 - 28898627-28898728,28898826-28898906,28899419-288995... 28 4.4
05_03_0618 - 16262826-16263097,16263111-16263183 27 5.8
04_03_0845 - 20245836-20246046,20246137-20246219,20246330-202464... 27 7.7
03_02_0539 - 9329572-9330729,9330988-9331041 27 7.7
>09_02_0362 +
7860088-7860197,7861606-7861636,7861738-7861801,
7861922-7862052,7863575-7863784,7863891-7863956,
7864868-7865075,7866270-7866325,7866406-7867128,
7868246-7868299,7868667-7868695,7869501-7869585,
7870032-7870202,7870246-7870827
Length = 839
Score = 30.7 bits (66), Expect = 0.63
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -2
Query: 317 SVDSISGPHARFQLSGNSGRKTAAAAQAYYGNLVAGSIVSQLTAAAMVAPTP 162
SVD PH LS N A ++ GNLV ++++ AA P P
Sbjct: 215 SVDHAKNPHFLVLLSDNFLEARTALSRPLPGNLVTNHPITKMDTAATSVPVP 266
>10_07_0080 -
12704866-12705224,12705389-12705512,12705905-12706041,
12707971-12708106,12710346-12710759
Length = 389
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = +1
Query: 103 TEKVRSWSDVENGGCLASPHGVGATMAAAVNCDTMLPA 216
T SWS + GC S H G + AAA N T LPA
Sbjct: 7 TSSSPSWSSLFGLGCFTSSHSDGGS-AAAKNPGTPLPA 43
>09_04_0269 + 16265191-16265472,16265574-16266149
Length = 285
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Frame = +1
Query: 292 WGPL---MESTDPQCHILQHRRPRLPL 363
W PL M T P C +L++ RPRLPL
Sbjct: 150 WVPLVGEMARTGPLCLLLENPRPRLPL 176
>11_06_0111 -
20217128-20217198,20217648-20217770,20217924-20218637,
20218874-20218915,20219025-20219820
Length = 581
Score = 27.9 bits (59), Expect = 4.4
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +3
Query: 225 SVVCLCSSGCLPAAIPAELK---PSMGATNGVNRPPVPYI 335
S C ++GC A+IP LK PS +GVN VP +
Sbjct: 133 STQCNGNTGCCQASIPGNLKAFQPSFLKISGVNYSGVPCV 172
>09_02_0338 + 7426999-7428322,7428390-7428646
Length = 526
Score = 27.9 bits (59), Expect = 4.4
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = +1
Query: 301 LMESTDPQCHILQHRRPRLPLMQLEAPCSFNFCSLRAIRRYKSYYVD 441
LM C L HR P L + L A L+AI KSYY +
Sbjct: 397 LMVQHTRNCVTLPHRNPMLVVALLAATLGLVCLLLQAIYTMKSYYCE 443
>03_06_0356 + 33350365-33350707,33351683-33351799,33352663-33352790
Length = 195
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 296 PHARFQLSGNSGRKTAAAAQAYYGNLVAGSIVSQLTAAAMVA 171
P A +G++G+ TAA A G S+ ++ AAA++A
Sbjct: 146 PAAAAAATGSAGKATAATGDAGVGRRQRSSLAARAVAAAVLA 187
>03_05_0929 -
28898627-28898728,28898826-28898906,28899419-28899523,
28899598-28899670,28900235-28900287,28900987-28901307
Length = 244
Score = 27.9 bits (59), Expect = 4.4
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = -2
Query: 308 SISGPHARFQLSGNSGRKTAAAAQAYYGNLVAGSIVSQLTAAAMVA 171
S++ H R LS GR AAA A+ +A S S +AAA A
Sbjct: 8 SLARLHQRLSLSLLRGRSPPAAADAFLRRGLASSASSSSSAAAAAA 53
>05_03_0618 - 16262826-16263097,16263111-16263183
Length = 114
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 416 RIARREQKLKEHGASSCISGKRGRRC 339
R+ARR + LK + C G R RRC
Sbjct: 11 RMARRRRWLKRRRSGHCRCGLRSRRC 36
>04_03_0845 -
20245836-20246046,20246137-20246219,20246330-20246470,
20246561-20247421
Length = 431
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 299 GPHARFQLSGNSGRKTAAAAQAYYGNLVA 213
GP A F+LS S R AAA+A++ L A
Sbjct: 98 GPVALFRLSRTSFRGRVAAAEAWFRELAA 126
>03_02_0539 - 9329572-9330729,9330988-9331041
Length = 403
Score = 27.1 bits (57), Expect = 7.7
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Frame = -2
Query: 368 CISGKRGRRCCNIWHWGSVDSISGPH---ARFQLSGNSGRKTAAAAQAYYGNLVAGSIVS 198
C KR + + G+ S S P AR G + +AAA G AG+I+
Sbjct: 140 CRRNKRSGKSSSAAAAGASSSSSKPSSSAARQLPGGGASPMPSAAASTQPGGAAAGAIIP 199
Query: 197 QLTAAAMVAPTP*GDAKHPP 138
++M P A HPP
Sbjct: 200 PSGLSSMSHHLPFLGAMHPP 219
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,113,946
Number of Sequences: 37544
Number of extensions: 260870
Number of successful extensions: 781
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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