Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00422X
(474 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 31 0.42
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical... 28 3.0
Z81460-5|CAB03832.1| 952|Caenorhabditis elegans Hypothetical pr... 27 5.2
Z70209-3|CAA94147.1| 952|Caenorhabditis elegans Hypothetical pr... 27 5.2
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 27 5.2
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 27 5.2
U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p... 27 9.1
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein. 27 9.1
AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory cy... 27 9.1
AF125443-1|AAD12801.1| 783|Caenorhabditis elegans Hypothetical ... 27 9.1
AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in ... 27 9.1
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 31.1 bits (67), Expect = 0.42
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -2
Query: 371 SCISGKRGRRC--CNIWHWGSVDSISGPHARFQLSGN 267
+C SG +G RC C HWGS + G R +GN
Sbjct: 973 NCKSGYQGERCGECAQNHWGSPREVGGTCERCDCNGN 1009
>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
protein Y45F10B.10 protein.
Length = 1592
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 174 YHGSSSQL*HNAAGH*ISVVCLCSS 248
YH +S QL GH +V CLCSS
Sbjct: 896 YHIASEQLIGTFKGHTAAVTCLCSS 920
>Z81460-5|CAB03832.1| 952|Caenorhabditis elegans Hypothetical
protein C04A11.4 protein.
Length = 952
Score = 27.5 bits (58), Expect = 5.2
Identities = 9/24 (37%), Positives = 11/24 (45%)
Frame = -1
Query: 255 DSRCCTSILRKFSGRQHCVTVDCC 184
D+ CC K G C + DCC
Sbjct: 401 DNHCCNGSTCKLIGEAECASGDCC 424
>Z70209-3|CAA94147.1| 952|Caenorhabditis elegans Hypothetical
protein C04A11.4 protein.
Length = 952
Score = 27.5 bits (58), Expect = 5.2
Identities = 9/24 (37%), Positives = 11/24 (45%)
Frame = -1
Query: 255 DSRCCTSILRKFSGRQHCVTVDCC 184
D+ CC K G C + DCC
Sbjct: 401 DNHCCNGSTCKLIGEAECASGDCC 424
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 27.5 bits (58), Expect = 5.2
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Frame = -2
Query: 386 EHGASSCISGKRGRRC---CNIWHWGSVDSISGPHARFQLSGNSGRKTAAAAQAYYG 225
EH SC+SG G +C C + D ISG H Q + + Y+G
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-HCSCQPGWRGKKCNRPCLKGYFG 1250
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 27.5 bits (58), Expect = 5.2
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Frame = -2
Query: 386 EHGASSCISGKRGRRC---CNIWHWGSVDSISGPHARFQLSGNSGRKTAAAAQAYYG 225
EH SC+SG G +C C + D ISG H Q + + Y+G
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-HCSCQPGWRGKKCNRPCLKGYFG 1250
>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
protein 40 protein.
Length = 1415
Score = 26.6 bits (56), Expect = 9.1
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -2
Query: 320 GSVDSISGPHARFQLSGNSGRKTAAAAQAYYGNLVAGSIVSQLTAAAMVAPTP 162
G + + GP ++G +G A A Y +V G + LTAA + +PTP
Sbjct: 1133 GGIGGLGGPPNDLWING-TGSHMRAGASDY---MVDGLATAHLTAADIESPTP 1181
>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
Length = 1415
Score = 26.6 bits (56), Expect = 9.1
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -2
Query: 320 GSVDSISGPHARFQLSGNSGRKTAAAAQAYYGNLVAGSIVSQLTAAAMVAPTP 162
G + + GP ++G +G A A Y +V G + LTAA + +PTP
Sbjct: 1133 GGIGGLGGPPNDLWING-TGSHMRAGASDY---MVDGLATAHLTAADIESPTP 1181
>AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory
cytoplasmic polyA polymeraseprotein.
Length = 1113
Score = 26.6 bits (56), Expect = 9.1
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -2
Query: 200 SQLTAAAMVAPTP*GDAKHPPFSTSLQDRTFSVLFGIKMHL 78
+Q A+A PT DAKHP F+ +R S L GI L
Sbjct: 302 AQFRASASELPTDSVDAKHPCFA---NERMQSALIGISPQL 339
>AF125443-1|AAD12801.1| 783|Caenorhabditis elegans Hypothetical
protein H32C10.3 protein.
Length = 783
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = -1
Query: 270 E*RQEDSRCCTSILRKFSGRQHCVTVDCCCHGSPH 166
E +Q D C T + K S HC D C G H
Sbjct: 535 EEKQIDRYCFTCWIPKTSSSHHCSQCDKCVDGFDH 569
>AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform a protein.
Length = 1113
Score = 26.6 bits (56), Expect = 9.1
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -2
Query: 200 SQLTAAAMVAPTP*GDAKHPPFSTSLQDRTFSVLFGIKMHL 78
+Q A+A PT DAKHP F+ +R S L GI L
Sbjct: 302 AQFRASASELPTDSVDAKHPCFA---NERMQSALIGISPQL 339
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,650,693
Number of Sequences: 27780
Number of extensions: 189529
Number of successful extensions: 437
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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