Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00419
         (412 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6G8L6 Cluster: DEAD/DEAH box helicase domain protein; ...    36   0.42 
UniRef50_UPI0000DD7F11 Cluster: PREDICTED: similar to Collagen a...    35   0.56 
UniRef50_Q62F49 Cluster: Putative uncharacterized protein; n=1; ...    31   9.1  
UniRef50_A5BZ73 Cluster: Putative uncharacterized protein; n=1; ...    31   9.1  
UniRef50_A6R309 Cluster: Predicted protein; n=1; Ajellomyces cap...    31   9.1  

>UniRef50_A6G8L6 Cluster: DEAD/DEAH box helicase domain protein;
           n=1; Plesiocystis pacifica SIR-1|Rep: DEAD/DEAH box
           helicase domain protein - Plesiocystis pacifica SIR-1
          Length = 2132

 Score = 35.5 bits (78), Expect = 0.42
 Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
 Frame = -3

Query: 245 LCCCETACCDTAPGRLLN-CCWAAAAAPGGTRYPFSPYWLMRCGDTRDPAPICMCCMGLR 69
           L  C    CD  PG++    C  A A   G  YPF P    RCG        C  C    
Sbjct: 571 LWACANPECDQIPGKVREGLCEGAPAPLVGKLYPFDPGPRCRCGARVYELYTCRDCGATF 630

Query: 68  LLGAVRAFRGES-SWLW 21
           L G V+ +  ++ S LW
Sbjct: 631 LRGYVKGYELDAWSLLW 647


>UniRef50_UPI0000DD7F11 Cluster: PREDICTED: similar to Collagen
           alpha-1(II) chain precursor; n=1; Homo sapiens|Rep:
           PREDICTED: similar to Collagen alpha-1(II) chain
           precursor - Homo sapiens
          Length = 252

 Score = 35.1 bits (77), Expect = 0.56
 Identities = 17/38 (44%), Positives = 18/38 (47%)
 Frame = -3

Query: 209 PGRLLNCCWAAAAAPGGTRYPFSPYWLMRCGDTRDPAP 96
           PGR     WAA AA  G R P S  W    G+ R P P
Sbjct: 26  PGRAQVRGWAARAAAAGVRCPVSGVWSRWLGERRSPGP 63


>UniRef50_Q62F49 Cluster: Putative uncharacterized protein; n=1;
           Burkholderia mallei|Rep: Putative uncharacterized
           protein - Burkholderia mallei (Pseudomonas mallei)
          Length = 158

 Score = 31.1 bits (67), Expect = 9.1
 Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = -3

Query: 242 CC-CETACCDTAPGRLLNCCWAAAAAPGGTR 153
           CC C  A C  A   LLNC   A   PGG R
Sbjct: 101 CCRCAAAPCSVAAQLLLNCRVVACVPPGGRR 131


>UniRef50_A5BZ73 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 221

 Score = 31.1 bits (67), Expect = 9.1
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = -3

Query: 239 CCETACCDTAPGRLLNCCWAAAAAPGGTRYPFSPYWLMRCGDTRDPAPICMCC 81
           C     CD +    +NC +AA      T+   + Y      +T  P P C CC
Sbjct: 147 CLRKCSCDVSNQLCINCHYAANVCCLTTKCVEAYYTTCGGNETNQPPPKCSCC 199


>UniRef50_A6R309 Cluster: Predicted protein; n=1; Ajellomyces
           capsulatus NAm1|Rep: Predicted protein - Ajellomyces
           capsulatus NAm1
          Length = 1015

 Score = 31.1 bits (67), Expect = 9.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 251 YTLCCCETACCDTAPGRLLNCCWAAAAAP 165
           + L CCE A C+   G L  CC   A  P
Sbjct: 39  FRLPCCEQAICENCQGSLPECCPVCAHTP 67


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 305,717,988
Number of Sequences: 1657284
Number of extensions: 4856054
Number of successful extensions: 15246
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15186
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 18619342852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)