Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00419
         (412 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0413 + 22681957-22682035,22682253-22682788                       29   1.1  
09_04_0437 - 17587944-17588909                                         28   3.3  
04_03_0942 - 20958687-20959082,20959306-20959499,20959582-209599...    28   3.3  
09_03_0065 + 12013715-12013720,12013899-12014612                       27   4.4  
02_04_0514 + 23579439-23580148,23580601-23580913                       27   4.4  
02_01_0188 - 1262908-1262970,1264185-1264790,1265290-1266030           27   4.4  
09_04_0276 - 16306894-16307526,16307556-16308572                       27   5.8  
02_03_0241 - 16778301-16779767                                         27   5.8  
04_04_1162 - 31383886-31384644                                         27   7.7  
03_03_0062 + 14170303-14170637,14171799-14172029,14172224-141723...    27   7.7  

>02_04_0413 + 22681957-22682035,22682253-22682788
          Length = 204

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -3

Query: 239 CCETACCDTAPGRLLNCCWAAAAAPGGTRYPFSPYWLMRCGDTRDPA-PICMCC 81
           C    CC++A G   N C  +    GG + P SP     C +   P  P C CC
Sbjct: 102 CVHPPCCESAAGCCCNGC--SGGGCGGGQCPPSP----SCENHHPPCKPGCCCC 149


>09_04_0437 - 17587944-17588909
          Length = 321

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -3

Query: 179 AAAAPGGTRYPFSPYWLMRCGDTRDPAPICMCCMGLRLLGAVRAFRGESS 30
           A A PGG  +    + L++    R P PI +C   LR  G      G S+
Sbjct: 41  ALAFPGGGAHHHHHHHLLQQQPPRRPGPIAVCAQILRAEGPTGLLSGVSA 90


>04_03_0942 -
           20958687-20959082,20959306-20959499,20959582-20959976,
           20961168-20961532
          Length = 449

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 206 GRLLNCCWAAAAAPGGTRYPFSPYW 132
           GRL+   WAA A     R PF  +W
Sbjct: 57  GRLMPALWAALALAAAARAPFYRHW 81


>09_03_0065 + 12013715-12013720,12013899-12014612
          Length = 239

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -3

Query: 239 CCETACCDTAPGRLLNCC--WAAAAAPGGTRYPFSPYWLMRCGDTRDPAPICMCCMGL 72
           CC     D APGR    C  +   AAP G  Y  +      CG +RD  P   CC GL
Sbjct: 48  CCTFTLHDRAPGRTRRFCDAFGEIAAPAGLVYHCA------CG-SRDLHP---CCAGL 95


>02_04_0514 + 23579439-23580148,23580601-23580913
          Length = 340

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 218 DTAPGRLLNCCWAAAAAPGGTRYPFSPYWLMRCGD 114
           D   G  L  C+A AA P  +++  +  WL R GD
Sbjct: 22  DVHGGGNLLACYAKAARPRPSKWDDAQKWLSRAGD 56


>02_01_0188 - 1262908-1262970,1264185-1264790,1265290-1266030
          Length = 469

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -3

Query: 176 AAAPGGTRYPFSPYWL 129
           AAA GG   P SPYWL
Sbjct: 161 AAAGGGLALPHSPYWL 176


>09_04_0276 - 16306894-16307526,16307556-16308572
          Length = 549

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 127 ISQYGLNGYRVPPGXXXXXXXXFNNLPGAVSQQAVSQQHKVY 252
           I ++G   YR+PPG          NL GA+  +++ +  K Y
Sbjct: 26  ILRHGRRAYRLPPGPNPWPIIGNLNLIGALPHRSIHELSKRY 67


>02_03_0241 - 16778301-16779767
          Length = 488

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 16/38 (42%), Positives = 16/38 (42%)
 Frame = -3

Query: 233 ETACCDTAPGRLLNCCWAAAAAPGGTRYPFSPYWLMRC 120
           E A  D   G    C   AAA   GTRY    YW  RC
Sbjct: 348 EIAAADAEDGLYTTCAAIAAAVDEGTRYD-PDYW-KRC 383


>04_04_1162 - 31383886-31384644
          Length = 252

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -3

Query: 239 CCETACCDTAPGRLLNCCWAAAAAPGGTRYP 147
           C  T  C  APG +     AAA   G T+ P
Sbjct: 139 CASTGACRVAPGAVAARASAAAVGGGTTKVP 169


>03_03_0062 +
           14170303-14170637,14171799-14172029,14172224-14172326,
           14173284-14173513,14174258-14174456
          Length = 365

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 18/58 (31%), Positives = 24/58 (41%)
 Frame = -3

Query: 245 LCCCETACCDTAPGRLLNCCWAAAAAPGGTRYPFSPYWLMRCGDTRDPAPICMCCMGL 72
           LC   ++   ++    L   W +AAA GG +Y    YW    G    P   C  C GL
Sbjct: 42  LCLLSSSSSSSSRTSSLRGSWGSAAAKGGKKY---LYW---GGRVDCPGKHCGTCAGL 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,809,629
Number of Sequences: 37544
Number of extensions: 154025
Number of successful extensions: 580
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)