Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00419
         (412 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59726| Best HMM Match : Keratin_B2 (HMM E-Value=5.9)                29   2.0  
SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0)                27   4.5  
SB_4846| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.0  

>SB_59726| Best HMM Match : Keratin_B2 (HMM E-Value=5.9)
          Length = 319

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 10  YAPHHNQLDSPRNARTAPSNLSPMQHMQ 93
           + PHH     P +ART  +++SP +H Q
Sbjct: 72  HCPHHPVQTLPTSARTNTAHISPYKHCQ 99



 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 10  YAPHHNQLDSPRNARTAPSNLSPMQH 87
           + PHH     P +ART  +++SP +H
Sbjct: 222 HCPHHPVQTLPTSARTNTAHISPYKH 247



 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 10  YAPHHNQLDSPRNARTAPSNLSPMQH 87
           + PHH     P +ART  +++SP +H
Sbjct: 247 HCPHHPVQTLPTSARTNTAHISPCKH 272


>SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 785

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 18/51 (35%), Positives = 19/51 (37%)
 Frame = -3

Query: 203 RLLNCCWAAAAAPGGTRYPFSPYWLMRCGDTRDPAPICMCCMGLRLLGAVR 51
           R+ NCCW     P GT  P            R  AP C  C G R   A R
Sbjct: 538 RMKNCCWECTECPQGTISP------------RYAAPSCSNCTGGRTPNAAR 576


>SB_4846| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 10  YAPHHNQLDSPRNARTAPSNLSPMQH 87
           + PHH     P +ART  +++SP +H
Sbjct: 341 HCPHHPVQTLPTSARTNTAHISPYKH 366



 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 10  YAPHHNQLDSPRNARTAPSNLSPMQH 87
           + PHH     P +ART  +++SP +H
Sbjct: 559 HCPHHPVQTLPTSARTNTAHISPYKH 584


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,726,446
Number of Sequences: 59808
Number of extensions: 156133
Number of successful extensions: 429
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)