Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00419
         (412 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-9|CAO82014.1|  227|Caenorhabditis elegans Hypothetical pr...    28   3.0  
U13646-6|AAC24421.2| 1376|Caenorhabditis elegans Flectin protein...    27   7.0  
Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical pr...    23   8.9  
U41749-6|AAB52487.2|   90|Caenorhabditis elegans Hypothetical pr...    26   9.2  
AL022272-1|CAA18354.1|   77|Caenorhabditis elegans Hypothetical ...    26   9.2  

>Z37983-9|CAO82014.1|  227|Caenorhabditis elegans Hypothetical
           protein B0393.9b protein.
          Length = 227

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -3

Query: 236 CETACCDTAPGRLLNCCWAAAAAPGGTRYPFS 141
           C+T  C   PG+L++C         G+R+ ++
Sbjct: 23  CKTVICPKQPGKLISCDMCHTCLDSGSRFCYT 54


>U13646-6|AAC24421.2| 1376|Caenorhabditis elegans Flectin protein 1
            protein.
          Length = 1376

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = -3

Query: 188  CWAAAAAPGGTRYPFSPYWLMRCGDTRDPAPICMCC 81
            C      P  T+ P   ++  RC + +   P+CM C
Sbjct: 1110 CHMECFRPRMTKVPEGDWFCQRCREEKSGRPMCMFC 1145


>Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical
           protein F29D10.2 protein.
          Length = 149

 Score = 22.6 bits (46), Expect(2) = 8.9
 Identities = 7/18 (38%), Positives = 7/18 (38%)
 Frame = -3

Query: 239 CCETACCDTAPGRLLNCC 186
           CC   CC    G    CC
Sbjct: 97  CCRPCCCGCGCGCGCGCC 114



 Score = 22.2 bits (45), Expect(2) = 8.9
 Identities = 6/10 (60%), Positives = 6/10 (60%)
 Frame = -3

Query: 242 CCCETACCDT 213
           CCC   CC T
Sbjct: 75  CCCRPKCCCT 84


>U41749-6|AAB52487.2|   90|Caenorhabditis elegans Hypothetical
           protein F09E10.1 protein.
          Length = 90

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +1

Query: 16  PHHNQLDSPRNARTAPS-NLSPMQHMQM 96
           P H +LD P N R AP+    P + M M
Sbjct: 53  PGHEELDRPPNGRRAPTVACEPTEEMMM 80


>AL022272-1|CAA18354.1|   77|Caenorhabditis elegans Hypothetical
           protein H12C20.2b protein.
          Length = 77

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 239 CCETACCDTAPGRLLNCCW 183
           CC+   C++A  R  N CW
Sbjct: 49  CCQLVKCNSAVNRQFNRCW 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,942,986
Number of Sequences: 27780
Number of extensions: 111804
Number of successful extensions: 362
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)