Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00419
         (412 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   5.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   5.4  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   7.2  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   7.2  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 165 RRHAVPVQPVLADEV 121
           R+  VP+QPV++D +
Sbjct: 200 RKFNVPLQPVVSDPI 214


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 165 RRHAVPVQPVLADEV 121
           R+  VP+QPV++D +
Sbjct: 200 RKFNVPLQPVVSDPI 214


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 327 DLYILT*DITNCYYTKYN 380
           D Y+L  + T  Y TK+N
Sbjct: 196 DYYLLAANYTGWYLTKHN 213


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 327 DLYILT*DITNCYYTKYN 380
           D Y+L  + T  Y TK+N
Sbjct: 196 DYYLLAANYTGWYLTKHN 213


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,868
Number of Sequences: 438
Number of extensions: 1553
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)