Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00419
         (412 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76140.1 68414.m08842 prolyl oligopeptidase, putative / proly...    29   1.6  
At1g15260.1 68414.m01826 expressed protein EST gb|N65467 comes f...    27   4.9  
At2g46050.1 68415.m05728 pentatricopeptide (PPR) repeat-containi...    27   6.5  
At3g60720.1 68416.m06793 receptor-like protein kinase-related co...    26   8.6  

>At1g76140.1 68414.m08842 prolyl oligopeptidase, putative / prolyl
           endopeptidase, putative / post-proline cleaving enzyme,
           putative similar to SP|Q9QUR6 Prolyl endopeptidase (EC
           3.4.21.26) (Post-proline cleaving enzyme) {Mus
           musculus}; contains Pfam profiles PF00326: prolyl
           oligopeptidase family, PF02897: Prolyl oligopeptidase,
           N-terminal beta-propeller domain
          Length = 731

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 137 YWLMRCGDTRDPAPICMCCMGLRLLGAVRAFRGESSWL 24
           Y +M  G++ DP      C    L G + +FRG SS+L
Sbjct: 256 YLIMSIGESCDPVNKLYYCDMTSLSGGLESFRGSSSFL 293


>At1g15260.1 68414.m01826 expressed protein EST gb|N65467 comes from
           this gene
          Length = 178

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 251 YTLCCCETACCDTAPGRLLN 192
           YT+ CC+TA  DT   + LN
Sbjct: 63  YTVICCDTAVADTTHQKSLN 82


>At2g46050.1 68415.m05728 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 590

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +1

Query: 7   YYAPHHNQLDSPRNARTAP-SNLSPMQHMQMGAGSRVSPHLISQYGLNGYRVPPG 168
           + A H N L S +N RT P S+ SP+    +   S    HL      +G+ V  G
Sbjct: 12  FLANHQNHLSSLQNIRTIPSSSSSPVAISSVSKLSASLDHLSDVKQEHGFMVKQG 66


>At3g60720.1 68416.m06793 receptor-like protein kinase-related
           contains Pfam PF01657: Domain of unknown function,
           duplicated in 33kDa secretory proteins; weak similarity
           to receptor-like protein kinase homolog RK20-1
           (GI:4530126) [Phaseolus vulgaris]
          Length = 279

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 230 TACCDTAPGRLLNCCWAAAAAPGGTRYPFSPYW 132
           TAC   + G+L N C +A AA       ++ YW
Sbjct: 201 TACLAESVGKLKNLCGSAVAAEVYLAQCYARYW 233


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,377,212
Number of Sequences: 28952
Number of extensions: 98834
Number of successful extensions: 296
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)