Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00417
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S...    28   1.6  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    27   2.8  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    27   3.7  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    25   8.6  

>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
           L3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 326

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 91  KPIYTYPSETGKASEPPIHPIKVINFSGHH 180
           +P+Y   +ETG+ S  P+  I    +SGHH
Sbjct: 232 EPVYRIIAETGRKSREPVFVIGA--YSGHH 259


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 421  VWRNCKSV*VNTTRSSCFF*READILATLCM 329
            +WR C S+   TT S       A+ LA+LC+
Sbjct: 971  MWRECLSILQQTTNSEDLIRETAEDLASLCI 1001


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 319 LSTSCIKWQECQLRVRKSMMIW 384
           +S SC  W   + R+R  M++W
Sbjct: 592 MSASCSYWSSARDRIRSQMVVW 613


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 556 WLCSNHVSDNIIILIPHNFEVCTIIPT 476
           W    H++ N   + P NF  C  IPT
Sbjct: 43  WWIGRHINTNTQGIFPSNFVHCLDIPT 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,992,965
Number of Sequences: 5004
Number of extensions: 60792
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)