Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00417
         (742 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27238| Best HMM Match : DUF433 (HMM E-Value=8.2)                    29   4.0  
SB_40804| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_34119| Best HMM Match : Chitin_bind_1 (HMM E-Value=5.8)             28   9.1  

>SB_27238| Best HMM Match : DUF433 (HMM E-Value=8.2)
          Length = 368

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +2

Query: 566 RLKRLHRVSCPLGHNDSS 619
           R KR+H+VS  LGH DSS
Sbjct: 16  RFKRIHQVSHELGHEDSS 33


>SB_40804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1044

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 738 INFNPLKCCKL*LSRYCSMP 679
           +NFNP KCC L +SR  + P
Sbjct: 875 LNFNPSKCCVLHISRKKNSP 894


>SB_34119| Best HMM Match : Chitin_bind_1 (HMM E-Value=5.8)
          Length = 303

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -2

Query: 189 KVTMMATEIY-NFYGMYGGLRGFTCFTRISVDWLEGFFVAN 70
           +V  +   +Y +  G +G  RGF    R+ VD  EG F  N
Sbjct: 142 RVVWITPRVYFSTTGWFGSHRGFISVQRVGVDHTEGLFQYN 182


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,697,496
Number of Sequences: 59808
Number of extensions: 433231
Number of successful extensions: 835
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)