Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00415
         (309 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0409 - 20503480-20503678,20504522-20504717,20504805-205048...   136   3e-33
01_01_0745 + 5769150-5769152,5769268-5769375,5769812-5769854,576...   136   3e-33
05_02_0095 + 6564703-6564705,6564848-6564955,6565153-6565195,656...    97   3e-21
02_02_0196 + 7685933-7685961,7686086-7686284                           96   6e-21
02_02_0195 + 7676014-7676094,7676111-7676218,7676307-7676349,767...    44   2e-05
01_06_0957 - 33352904-33353212,33353316-33353465,33353544-333536...    27   4.0  
05_03_0249 - 10946993-10947073,10947307-10947432,10948497-109485...    25   9.2  

>06_03_0409 -
           20503480-20503678,20504522-20504717,20504805-20504847,
           20505632-20505739,20505848-20505850
          Length = 182

 Score =  136 bits (329), Expect = 3e-33
 Identities = 61/85 (71%), Positives = 69/85 (81%)
 Frame = +2

Query: 5   RDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPH 184
           R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFYVVL R G+ VA RRR   +VG  H
Sbjct: 95  RRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQH 154

Query: 185 RLTKEDAMKWFQQKYDGIILNSKES 259
           R+TKEDAMKWFQ KY+G+ILN  ++
Sbjct: 155 RVTKEDAMKWFQVKYEGVILNKAQA 179


>01_01_0745 +
           5769150-5769152,5769268-5769375,5769812-5769854,
           5769945-5770140,5770836-5771034
          Length = 182

 Score =  136 bits (329), Expect = 3e-33
 Identities = 61/85 (71%), Positives = 69/85 (81%)
 Frame = +2

Query: 5   RDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPH 184
           R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFYVVL R G+ VA RRR   +VG  H
Sbjct: 95  RRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQH 154

Query: 185 RLTKEDAMKWFQQKYDGIILNSKES 259
           R+TKEDAMKWFQ KY+G+ILN  ++
Sbjct: 155 RVTKEDAMKWFQVKYEGVILNKAQA 179


>05_02_0095 +
           6564703-6564705,6564848-6564955,6565153-6565195,
           6565303-6565409,6566310-6566395,6566396-6566594
          Length = 181

 Score = 96.7 bits (230), Expect = 3e-21
 Identities = 41/63 (65%), Positives = 50/63 (79%)
 Frame = +2

Query: 71  KYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDGIILNS 250
           +YDPS GIYG+DFYVVL R G+ VA RRR   +VG  HR+TKEDAMKWFQ KY+G+ILN 
Sbjct: 116 RYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNK 175

Query: 251 KES 259
            ++
Sbjct: 176 AQA 178


>02_02_0196 + 7685933-7685961,7686086-7686284
          Length = 75

 Score = 95.9 bits (228), Expect = 6e-21
 Identities = 41/62 (66%), Positives = 49/62 (79%)
 Frame = +2

Query: 74  YDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDGIILNSK 253
           YDPS GIYG+DFYVVL R G+ VA RRR   +VG  HR+TKEDAMKWFQ KY+G+ILN  
Sbjct: 11  YDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKA 70

Query: 254 ES 259
           ++
Sbjct: 71  QA 72


>02_02_0195 +
           7676014-7676094,7676111-7676218,7676307-7676349,
           7676449-7676648
          Length = 143

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 20/23 (86%), Positives = 20/23 (86%)
 Frame = +2

Query: 5   RDNFSATGNFGFGIQEHIDLGIK 73
           R NFS TG FGFGIQEHIDLGIK
Sbjct: 121 RRNFSDTGCFGFGIQEHIDLGIK 143


>01_06_0957 -
           33352904-33353212,33353316-33353465,33353544-33353684,
           33354116-33354709
          Length = 397

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 93  FMDWTFTSYLAGQVS--T*HTEGVRQEKWDFPTASQRKML*SGSN 221
           F +W  T+  A  ++  T  T G   ++W   TA+ R+ML  GS+
Sbjct: 106 FPEWLITALFAVFLASATFKTYGTGMKRWRAETAAARRMLEGGSS 150


>05_03_0249 -
           10946993-10947073,10947307-10947432,10948497-10948552,
           10949066-10949338,10951434-10951716
          Length = 272

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 113 VVLGRPGFNVAHRRRKTGKVG 175
           VVLG  G+++A  RR+ G +G
Sbjct: 54  VVLGSSGYSIAKIRRRVGDLG 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,107,682
Number of Sequences: 37544
Number of extensions: 157479
Number of successful extensions: 392
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)