Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00415
         (309 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0)              144   2e-35
SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)                   28   1.8  
SB_44948| Best HMM Match : RseA_N (HMM E-Value=2.2)                    27   4.1  
SB_11280| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.2  
SB_2508| Best HMM Match : RVT_1 (HMM E-Value=1e-05)                    26   7.2  
SB_15327| Best HMM Match : EGF (HMM E-Value=7.3)                       26   7.2  
SB_836| Best HMM Match : DUF82 (HMM E-Value=5.3)                       23   9.1  

>SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0)
          Length = 260

 Score =  144 bits (348), Expect = 2e-35
 Identities = 61/71 (85%), Positives = 68/71 (95%)
 Frame = +2

Query: 14  FSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLT 193
           FSATGNFGFGIQEHIDLGIKYDPSIGIYG+DF+VVLGRPGFN++ R+ K G+VGFPHRLT
Sbjct: 91  FSATGNFGFGIQEHIDLGIKYDPSIGIYGMDFFVVLGRPGFNISKRKHKQGRVGFPHRLT 150

Query: 194 KEDAMKWFQQK 226
           K+DAMKWFQQK
Sbjct: 151 KDDAMKWFQQK 161


>SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)
          Length = 551

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 2   RRDNFSATGNFGFGIQEHIDLGIKYD 79
           ++ ++SATG+F   ++EHI  G + D
Sbjct: 306 KKSHYSATGSFDGSVEEHISEGAQED 331


>SB_44948| Best HMM Match : RseA_N (HMM E-Value=2.2)
          Length = 169

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 244 KYDTIIFLLEPLHSIFLCEAVGKSHFSCLTPSVCYVETW 128
           KY+ I+  +E   S F+  A  K HF C T +    + W
Sbjct: 3   KYEKILHEMESFISFFVGLAQLKKHFLCFTKTEIQNKRW 41


>SB_11280| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/38 (23%), Positives = 22/38 (57%)
 Frame = -1

Query: 243 SMIPSYFCWNHFIASSFVRRWGNPTFPVLRLLCATLKP 130
           +M+ + + ++  +AS  +R W +P  P+++ +    KP
Sbjct: 147 AMVVTVWLYSFVVASLSLRNWTSPEGPLVKTINGCFKP 184


>SB_2508| Best HMM Match : RVT_1 (HMM E-Value=1e-05)
          Length = 525

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 166 SCLTPSVCYVETWPAKYDVKVQSINSN*GIVLDTQVNVF 50
           SCL  S   ++  P+ YD+   SINS    ++D  +N F
Sbjct: 52  SCLKKSKLCLDNTPSLYDLDTFSINS----IVDNNINNF 86


>SB_15327| Best HMM Match : EGF (HMM E-Value=7.3)
          Length = 292

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 65  GIKYDPSIGIYGLDFYVVLGRPGF 136
           G+K  P IG +G  FY+ +  PGF
Sbjct: 208 GVKASPVIGFHGTGFYLAV--PGF 229


>SB_836| Best HMM Match : DUF82 (HMM E-Value=5.3)
          Length = 168

 Score = 23.4 bits (48), Expect(2) = 9.1
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 72  LIPKSMCS*IPKPKL 28
           LIPKS+ S +PKP L
Sbjct: 64  LIPKSLASSLPKPIL 78



 Score = 20.6 bits (41), Expect(2) = 9.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 174 PTFPVLRLLCATLKPG 127
           PT P   L C T++PG
Sbjct: 18  PTTPSPSLKCPTVQPG 33


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,129,995
Number of Sequences: 59808
Number of extensions: 176643
Number of successful extensions: 462
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 389827759
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)