Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00414
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    29   0.96 
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    28   1.7  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    28   1.7  
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   3.9  
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    26   5.1  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   5.1  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    26   6.7  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    25   8.9  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    25   8.9  
SPBC2A9.02 |||NAD dependent epimerase/dehydratase family protein...    25   8.9  
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    25   8.9  
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    25   8.9  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    25   8.9  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 430  AQLTEMSLPTYSNRWTPKKINEWCS 504
            A++ ++ L  YS++ TP K+NEW +
Sbjct: 1910 AEVAKLLLEVYSSQDTPTKLNEWAN 1934


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 44  LTNYRPLRTSLKKTWSVVYKVLCKASMVY 130
           ++NYRPL   LK  W  V  +L    +VY
Sbjct: 335 ISNYRPLDIWLKGYWGRVVSILLNTILVY 363


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = +3

Query: 120 RWSTAYNGSGRIYTSYIIDGLLWIG---LQYNFKRSRWSISNS*SHR*ALFNFPAYQSVR 290
           RW    NG+ R+    +I  LL+ G   L Y  ++  + + NS ++   L+   A  S R
Sbjct: 466 RWGAIENGTARLILGTMITSLLFPGIPLLYYGDEQGMYVLDNSANN--YLYGRQAMNSAR 523

Query: 291 QWSAGG 308
            W   G
Sbjct: 524 AWYIHG 529


>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
 Frame = -2

Query: 436 AGPFILFSYTFISFELSVRASPGRKYDPLLRFP----TYSK 326
           A P +LF+ T  S  LS+   P +++DP+L+FP    TYS+
Sbjct: 55  AKPKLLFTPTKSS--LSIGNFPYKEFDPVLKFPGIHYTYSR 93


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +1

Query: 433 QLTEMSLPTYSNRWTPKKINEWCSIHSDAKVRDNF 537
           Q+     P     W  K  N WC++++  K+R+ F
Sbjct: 277 QILHRVFPFARGLWEDKVANFWCTLNTVFKIREVF 311


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 123 WSTAYNGSGRIYTSYIIDGLLWI 191
           + T Y  S R +T +++ GL+WI
Sbjct: 573 YGTGYIFSKRFFTGWVVVGLIWI 595


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +1

Query: 181 YYGSVFNTTLNAVDGLSQIVEATGELCSTFLRTRVFASGAQGVPLIYIALNTLGTLVKGH 360
           Y  S+F+ T+ AVD   +I     E+C+  L    ++SG+    L  +  N  GT  + H
Sbjct: 313 YTNSIFSATIGAVDAEHKI-PFYSEVCAAQL-VSAYSSGSH---LSILTTNPEGTCTRSH 367


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 409 YMKTK*RAQLTEMSLPTYSNRWTPKKIN--EWCSIHSDAKVRDNFVDLISK 555
           Y K   R    + S  TYS+ ++P   +  +W  IH++     NF ++IS+
Sbjct: 609 YEKVSERFVKIDDSYITYSDIFSPLSHSHKDWFRIHTEENSSKNFYEIISE 659


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = +1

Query: 481 KKINEWCSIHSDAKVRDNFVDLISKFAHSLNGEENNTKTNLMG 609
           K INEW SI    K   N VD     A  L  ++     N+ G
Sbjct: 144 KFINEWDSIFEPVKSEFNLVDASLGLAKCLAIKDEQELANIKG 186


>SPBC2A9.02 |||NAD dependent epimerase/dehydratase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 297 SAGGPAYLYSFEYVGNLSKGSYFLPGLALTDNSNDMKVYENKMK 428
           +AGG  Y+ + E +  L KG     G+  T   +D  +Y+   K
Sbjct: 42  AAGGTPYIGTLEDLDTLKKGVAQCDGVIHTAFVHDFSIYQEACK 85


>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +1

Query: 295 GAQGVPLIYIALNTLGTLVKGHIFYLDLPLL 387
           G  G PL  IALNTL TL K H+   D+P++
Sbjct: 355 GLSGPPLKPIALNTLRTLRK-HL-SSDIPII 383


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 433 GPFILFSYTFISFELSVRASPGRKYDPLLRFPTYSKLY 320
           G  +LF+Y+ +SF L+  A+    YD  L   ++S  Y
Sbjct: 5   GCLLLFAYSLLSFSLTA-ATIDETYDESLFIKSFSSRY 41


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
 Frame = -3

Query: 606 HQIRLCIVLFSIKAVREFGNEIYKVVPNFSITVDTAPLIDFLRCPTVRICRQAHLRE--- 436
           H  +L +  F+   V+    E +   PN    V   P ++     TVRIC    + E   
Sbjct: 538 HMQKLNLPDFTPSWVKRCVIETFAKFPNDRFNVIVKPALNPAERMTVRICCHDCINEYFT 597

Query: 435 LGPSFCFHILSYHL 394
            GP F F     HL
Sbjct: 598 AGPGFTFGNFHIHL 611


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,240,855
Number of Sequences: 5004
Number of extensions: 68459
Number of successful extensions: 161
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)