Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00414
         (761 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485...    29   4.0  
02_02_0146 - 7171656-7172044,7172383-7175008                           28   7.1  
11_03_0010 - 8922361-8922375,8923888-8924610                           28   9.3  
02_05_0075 - 25610386-25610508,25610529-25610583,25610801-256112...    28   9.3  

>05_03_0235 -
           10747649-10748118,10748226-10748314,10748477-10748574,
           10748934-10749046,10749107-10749200,10749557-10749589,
           10749734-10749851,10750110-10750210,10751036-10751233,
           10751337-10751471,10751752-10751830,10753650-10753738,
           10753835-10753987,10754100-10754285
          Length = 651

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 21/54 (38%), Positives = 24/54 (44%)
 Frame = +3

Query: 579 REQYKDEFDGLATVFRRNDQFLKINDGIKTDKGFRFCQMGLWGGMADRLTGALC 740
           RE Y+  F   ATV+    Q    ND  K   GF      LW  + D LTG LC
Sbjct: 416 REGYR--FSTAATVYNNGAQIGPTNDHKKG--GFWDSIKALWRNLIDFLTGRLC 465


>02_02_0146 - 7171656-7172044,7172383-7175008
          Length = 1004

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 315 YLYSFEYVGNLSKGSYFLPGLALTDNSNDMKVYENKMKGP 434
           YLY     G++ KG   LP L       D++++ NK+ GP
Sbjct: 317 YLYYNNLTGSIPKGVSMLPNLT------DIRLFNNKLSGP 350


>11_03_0010 - 8922361-8922375,8923888-8924610
          Length = 245

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +1

Query: 133 PITAVVGSILPISLTDYYGSVFNTTLNA---VDGLSQIVEATGELCSTFLRTRVFASGAQ 303
           PIT +V S+L +++     + F TT+NA     G++    A GE       + + A  A 
Sbjct: 5   PITLLVLSLLLLAVAAATAATFPTTVNAYTPATGVADAGAAAGEAAGANAASNIAAGAAA 64

Query: 304 GV 309
           G+
Sbjct: 65  GM 66


>02_05_0075 -
           25610386-25610508,25610529-25610583,25610801-25611240,
           25612951-25613619,25614551-25615870
          Length = 868

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 21/53 (39%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
 Frame = -2

Query: 379 ASPGRKYDPLLRFPTYSKLYR*AGPPALHWRTLWYAG---KLNKAHLWLQLFE 230
           A P   Y  LLR P   KLYR  G    HW   W A      N+  LWL  F+
Sbjct: 207 ALPPSLYQHLLRAPGPPKLYR--GVRQRHWGK-WVAEIRLPRNRTRLWLGTFD 256


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,552,259
Number of Sequences: 37544
Number of extensions: 419876
Number of successful extensions: 931
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)