Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00414
         (761 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37480| Best HMM Match : rve (HMM E-Value=4.7e-22)                   33   0.25 
SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29)               30   1.8  
SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)               29   4.1  
SB_31002| Best HMM Match : RhoGAP (HMM E-Value=0)                      29   5.5  

>SB_37480| Best HMM Match : rve (HMM E-Value=4.7e-22)
          Length = 900

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -1

Query: 584 FSSPLRLCANLEMRSTKLSLTLASLWILHHSLIFFGVQRFEYVGKLISVSW 432
           + SP     +  + ST +  T+ S + L  S++FFGV R    G +++ SW
Sbjct: 802 YRSPAYKYVDPSVHSTAVVFTIISSFFLLLSILFFGVVRLGKTGDVLAASW 852


>SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
          Length = 403

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 397 FELSVRASPGRKYDPLLRFPTYSKLYR*AGPPALHWRTL 281
           F +S++ASP   Y+PL R PT   L     PP   ++ L
Sbjct: 289 FLVSLQASPSYPYNPLPRIPTSLSLVSLQAPPLYTYKPL 327


>SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)
          Length = 379

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 391 LSVRASPGRKYDPLLRFPTYSKLYR*AGPPALHWRTL 281
           +S++ASP   Y PL R PT   L     PP+  ++ L
Sbjct: 62  VSLQASPSYPYKPLPRIPTSLSLVSLQAPPSYPYKPL 98


>SB_31002| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 1250

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 22/97 (22%), Positives = 48/97 (49%)
 Frame = +1

Query: 280 RVFASGAQGVPLIYIALNTLGTLVKGHIFYLDLPLLITQMI*KYMKTK*RAQLTEMSLPT 459
           + F +GA+ V L  +  + +  ++K ++  L  PLL  ++  +++K      L + S  T
Sbjct: 298 QAFENGAELVDLSTVPPHVIAAVLKLYLRQLPEPLLTFKLYPEFIK------LAKESFNT 351

Query: 460 YSNRWTPKKINEWCSIHSDAKVRDNFVDLISKFAHSL 570
             N  + K  ++      D  +R ++V+L+ K  H++
Sbjct: 352 IDNLTSCKNASQ------DESIRQDYVELVQKLRHAV 382


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,653,258
Number of Sequences: 59808
Number of extensions: 489188
Number of successful extensions: 985
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)