Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00414
         (761 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36753-17|CAA85342.1|  821|Caenorhabditis elegans Hypothetical p...    30   2.1  
AF240692-1|AAF61239.1|  821|Caenorhabditis elegans LIN-5 protein.      30   2.1  

>Z36753-17|CAA85342.1|  821|Caenorhabditis elegans Hypothetical
           protein T09A5.10 protein.
          Length = 821

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +1

Query: 139 TAVVGSILPISLTDYYGSVFNTTLNAVDGLSQIVEATGELCSTFLR--TRVFASGAQGVP 312
           T+VV S+L   LT+Y+GS F      +  L+++ E  G + ++ +   TR F +  +   
Sbjct: 5   TSVVKSML--QLTNYFGSNFTPKTETISSLAELWERHGSMIASMMSCDTREFGTADKFYE 62

Query: 313 LIYIALNT 336
           +I+  + T
Sbjct: 63  VIFRKIAT 70


>AF240692-1|AAF61239.1|  821|Caenorhabditis elegans LIN-5 protein.
          Length = 821

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +1

Query: 139 TAVVGSILPISLTDYYGSVFNTTLNAVDGLSQIVEATGELCSTFLR--TRVFASGAQGVP 312
           T+VV S+L   LT+Y+GS F      +  L+++ E  G + ++ +   TR F +  +   
Sbjct: 5   TSVVKSML--QLTNYFGSNFTPKTETISSLAELWERHGSMIASMMSCDTREFGTADKFYE 62

Query: 313 LIYIALNT 336
           +I+  + T
Sbjct: 63  VIFRKIAT 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,669,587
Number of Sequences: 27780
Number of extensions: 375776
Number of successful extensions: 779
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)