Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00414
         (761 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   2.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.4  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   5.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   5.4  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   7.1  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   7.1  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +1

Query: 196 FNTTLNAVDGLSQIVEATGELCSTFLRTRVFASGAQGVPLIYIAL 330
           F T +   D   Q++     +   +LRT  F      +PL YI L
Sbjct: 140 FRTGIMQQDNAEQVILDPKLIAKHYLRTWFFLDLISSIPLDYIFL 184


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +1

Query: 196 FNTTLNAVDGLSQIVEATGELCSTFLRTRVFASGAQGVPLIYIAL 330
           F T +   D   Q++     +   +LRT  F      +PL YI L
Sbjct: 140 FRTGIMQQDNAEQVILDPKLIAKHYLRTWFFLDLISSIPLDYIFL 184


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 183 LWIGLQYNFKRSRWSISN 236
           LW+ L++N    RW++S+
Sbjct: 74  LWLKLEWNDVNMRWNVSD 91


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +1

Query: 196 FNTTLNAVDGLSQIVEATGELCSTFLRTRVFASGAQGVPLIYIAL 330
           F T +   D   Q++     +   +LRT  F      +PL YI L
Sbjct: 140 FRTGIMQQDNAEQVILDPKLIAKHYLRTWFFLDLISSIPLDYIFL 184


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 571  NGEENNTKTNLMGLQPY 621
            +GEE   +  L GL+PY
Sbjct: 1064 DGEEGGAELRLTGLRPY 1080


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 571  NGEENNTKTNLMGLQPY 621
            +GEE   +  L GL+PY
Sbjct: 1060 DGEEGGAELRLTGLRPY 1076


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 591 CIVLFSIKAVREFGNEIYKVVPN 523
           CIV  S   VR  GN +  ++P+
Sbjct: 215 CIVFGSDMIVRSIGNSLMVILPD 237


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/17 (52%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = +3

Query: 429 GPAHGDELAYIF-EPLD 476
           G  HGDE+ Y+F  PL+
Sbjct: 493 GVLHGDEVEYVFGHPLN 509


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 412 YTFISFELSVRASPGRKY 359
           Y F+ F    R+  GRKY
Sbjct: 476 YAFVPFSAGPRSCVGRKY 493


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 253 ELCSTFLRTRVFASGAQGVPLIYIA 327
           E+ +   R+   AS A G PL Y+A
Sbjct: 125 EVNARLSRSSALASKATGYPLAYVA 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,405
Number of Sequences: 438
Number of extensions: 4762
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)