Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00413
         (784 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation facto...   113   2e-27
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    25   0.90 
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    24   1.6  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   2.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   3.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   3.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.4  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   8.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   8.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   8.4  

>AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation factor
           1-alpha protein.
          Length = 56

 Score =  113 bits (271), Expect = 2e-27
 Identities = 53/56 (94%), Positives = 54/56 (96%)
 Frame = +3

Query: 564 LQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPG 731
           LQDVYKIGGIGTVPVGRVETGVLKPG +VVFAPANITTEVKSVEMHHEAL EAVPG
Sbjct: 1   LQDVYKIGGIGTVPVGRVETGVLKPGMVVVFAPANITTEVKSVEMHHEALPEAVPG 56


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -3

Query: 632 QHTSFN-SADGHGTNTTDFVYVLQ 564
           ++ SFN +A+GHG NT+   Y  Q
Sbjct: 280 EYNSFNWTANGHGHNTSSHNYYAQ 303


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 719 FLESFVVHLHRFDFSSDVG 663
           FLE  + H  RF FSS VG
Sbjct: 68  FLEMTLAHHCRFKFSSSVG 86


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 677 SSDVGGGKDNNGTWFQHTSF 618
           ++ V GG +NNGT   H+ F
Sbjct: 182 AAQVSGGNNNNGTPGGHSGF 201


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -2

Query: 387  ESDSSWVVANLLDV*GYFLLDFLKSGLTVWWFSGIHFVYSYDELLTPRVKASK 229
            +S  ++ + N L V   FLL   K  L + W  G+    +YDE  T  V  SK
Sbjct: 1267 QSVFAFFMMNALFVLIVFLLTLKKDYLHIKWPFGVKTNITYDE-STQEVHISK 1318


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -2

Query: 387  ESDSSWVVANLLDV*GYFLLDFLKSGLTVWWFSGIHFVYSYDELLTPRVKASK 229
            +S  ++ + N L V   FLL   K  L + W  G+    +YDE  T  V  SK
Sbjct: 1267 QSVFAFFMMNALFVLIVFLLTLKKDYLHIKWPFGVKTNITYDE-STQEVHISK 1318


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +3

Query: 588  GIGTVPVGRVETGVLKPGTIVVFAPANITTEV 683
            G+G +P         KP   V  AP  +TT V
Sbjct: 990  GLGLIPDNPSREDCTKPPEPVTPAPPQVTTGV 1021


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 618 ETGVLKPGTIVVFAPANITTEVKS 689
           ETG ++PG I    P   T EV++
Sbjct: 96  ETGSIRPGVIGGSKPRVATPEVEN 119


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -1

Query: 418 CCLRAIQKWARKRQQLGCSQSS*CMRIL 335
           CC  A+      RQ +  S+   C+R +
Sbjct: 615 CCYHAVAPGTDIRQSIALSRKKKCIRYM 642


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -1

Query: 418 CCLRAIQKWARKRQQLGCSQSS*CMRIL 335
           CC  A+      RQ +  S+   C+R +
Sbjct: 507 CCYHAVAPGTDIRQSIALSRKKKCIRYM 534


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,768
Number of Sequences: 336
Number of extensions: 4776
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)